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Mapping the Voxel-Wise Effective Connectome in Resting State fMRI
A network approach to brain and dynamics opens new perspectives towards understanding of its function. The functional connectivity from functional MRI recordings in humans is widely explored at large scale, and recently also at the voxel level. The networks of dynamical directed connections are far...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3771991/ https://www.ncbi.nlm.nih.gov/pubmed/24069220 http://dx.doi.org/10.1371/journal.pone.0073670 |
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author | Wu, Guo-Rong Stramaglia, Sebastiano Chen, Huafu Liao, Wei Marinazzo, Daniele |
author_facet | Wu, Guo-Rong Stramaglia, Sebastiano Chen, Huafu Liao, Wei Marinazzo, Daniele |
author_sort | Wu, Guo-Rong |
collection | PubMed |
description | A network approach to brain and dynamics opens new perspectives towards understanding of its function. The functional connectivity from functional MRI recordings in humans is widely explored at large scale, and recently also at the voxel level. The networks of dynamical directed connections are far less investigated, in particular at the voxel level. To reconstruct full brain effective connectivity network and study its topological organization, we present a novel approach to multivariate Granger causality which integrates information theory and the architecture of the dynamical network to efficiently select a limited number of variables. The proposed method aggregates conditional information sets according to community organization, allowing to perform Granger causality analysis avoiding redundancy and overfitting even for high-dimensional and short datasets, such as time series from individual voxels in fMRI. We for the first time depicted the voxel-wise hubs of incoming and outgoing information, called Granger causality density (GCD), as a complement to previous repertoire of functional and anatomical connectomes. Analogies with these networks have been presented in most part of default mode network; while differences suggested differences in the specific measure of centrality. Our findings could open the way to a new description of global organization and information influence of brain function. With this approach is thus feasible to study the architecture of directed networks at the voxel level and individuating hubs by investigation of degree, betweenness and clustering coefficient. |
format | Online Article Text |
id | pubmed-3771991 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-37719912013-09-25 Mapping the Voxel-Wise Effective Connectome in Resting State fMRI Wu, Guo-Rong Stramaglia, Sebastiano Chen, Huafu Liao, Wei Marinazzo, Daniele PLoS One Research Article A network approach to brain and dynamics opens new perspectives towards understanding of its function. The functional connectivity from functional MRI recordings in humans is widely explored at large scale, and recently also at the voxel level. The networks of dynamical directed connections are far less investigated, in particular at the voxel level. To reconstruct full brain effective connectivity network and study its topological organization, we present a novel approach to multivariate Granger causality which integrates information theory and the architecture of the dynamical network to efficiently select a limited number of variables. The proposed method aggregates conditional information sets according to community organization, allowing to perform Granger causality analysis avoiding redundancy and overfitting even for high-dimensional and short datasets, such as time series from individual voxels in fMRI. We for the first time depicted the voxel-wise hubs of incoming and outgoing information, called Granger causality density (GCD), as a complement to previous repertoire of functional and anatomical connectomes. Analogies with these networks have been presented in most part of default mode network; while differences suggested differences in the specific measure of centrality. Our findings could open the way to a new description of global organization and information influence of brain function. With this approach is thus feasible to study the architecture of directed networks at the voxel level and individuating hubs by investigation of degree, betweenness and clustering coefficient. Public Library of Science 2013-09-12 /pmc/articles/PMC3771991/ /pubmed/24069220 http://dx.doi.org/10.1371/journal.pone.0073670 Text en © 2013 Wu et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Wu, Guo-Rong Stramaglia, Sebastiano Chen, Huafu Liao, Wei Marinazzo, Daniele Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title | Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title_full | Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title_fullStr | Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title_full_unstemmed | Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title_short | Mapping the Voxel-Wise Effective Connectome in Resting State fMRI |
title_sort | mapping the voxel-wise effective connectome in resting state fmri |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3771991/ https://www.ncbi.nlm.nih.gov/pubmed/24069220 http://dx.doi.org/10.1371/journal.pone.0073670 |
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