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A new measure based on degree distribution that links information theory and network graph analysis
BACKGROUND: Detailed connection maps of human and nonhuman brains are being generated with new technologies, and graph metrics have been instrumental in understanding the general organizational features of these structures. Neural networks appear to have small world properties: they have clustered r...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3772777/ https://www.ncbi.nlm.nih.gov/pubmed/22726594 http://dx.doi.org/10.1186/2042-1001-2-7 |
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author | Hadley, Michael W McGranaghan, Matt F Willey, Aaron Liew, Chun Wai Reynolds, Elaine R |
author_facet | Hadley, Michael W McGranaghan, Matt F Willey, Aaron Liew, Chun Wai Reynolds, Elaine R |
author_sort | Hadley, Michael W |
collection | PubMed |
description | BACKGROUND: Detailed connection maps of human and nonhuman brains are being generated with new technologies, and graph metrics have been instrumental in understanding the general organizational features of these structures. Neural networks appear to have small world properties: they have clustered regions, while maintaining integrative features such as short average pathlengths. RESULTS: We captured the structural characteristics of clustered networks with short average pathlengths through our own variable, System Difference (SD), which is computationally simple and calculable for larger graph systems. SD is a Jaccardian measure generated by averaging all of the differences in the connection patterns between any two nodes of a system. We calculated SD over large random samples of matrices and found that high SD matrices have a low average pathlength and a larger number of clustered structures. SD is a measure of degree distribution with high SD matrices maximizing entropic properties. Phi (Φ), an information theory metric that assesses a system’s capacity to integrate information, correlated well with SD - with SD explaining over 90% of the variance in systems above 11 nodes (tested for 4 to 13 nodes). However, newer versions of Φ do not correlate well with the SD metric. CONCLUSIONS: The new network measure, SD, provides a link between high entropic structures and degree distributions as related to small world properties. |
format | Online Article Text |
id | pubmed-3772777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-37727772013-09-16 A new measure based on degree distribution that links information theory and network graph analysis Hadley, Michael W McGranaghan, Matt F Willey, Aaron Liew, Chun Wai Reynolds, Elaine R Neural Syst Circuits Research BACKGROUND: Detailed connection maps of human and nonhuman brains are being generated with new technologies, and graph metrics have been instrumental in understanding the general organizational features of these structures. Neural networks appear to have small world properties: they have clustered regions, while maintaining integrative features such as short average pathlengths. RESULTS: We captured the structural characteristics of clustered networks with short average pathlengths through our own variable, System Difference (SD), which is computationally simple and calculable for larger graph systems. SD is a Jaccardian measure generated by averaging all of the differences in the connection patterns between any two nodes of a system. We calculated SD over large random samples of matrices and found that high SD matrices have a low average pathlength and a larger number of clustered structures. SD is a measure of degree distribution with high SD matrices maximizing entropic properties. Phi (Φ), an information theory metric that assesses a system’s capacity to integrate information, correlated well with SD - with SD explaining over 90% of the variance in systems above 11 nodes (tested for 4 to 13 nodes). However, newer versions of Φ do not correlate well with the SD metric. CONCLUSIONS: The new network measure, SD, provides a link between high entropic structures and degree distributions as related to small world properties. BioMed Central 2012-06-24 /pmc/articles/PMC3772777/ /pubmed/22726594 http://dx.doi.org/10.1186/2042-1001-2-7 Text en Copyright © 2012 Budhiraja et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Hadley, Michael W McGranaghan, Matt F Willey, Aaron Liew, Chun Wai Reynolds, Elaine R A new measure based on degree distribution that links information theory and network graph analysis |
title | A new measure based on degree distribution that links information theory and
network graph analysis |
title_full | A new measure based on degree distribution that links information theory and
network graph analysis |
title_fullStr | A new measure based on degree distribution that links information theory and
network graph analysis |
title_full_unstemmed | A new measure based on degree distribution that links information theory and
network graph analysis |
title_short | A new measure based on degree distribution that links information theory and
network graph analysis |
title_sort | new measure based on degree distribution that links information theory and
network graph analysis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3772777/ https://www.ncbi.nlm.nih.gov/pubmed/22726594 http://dx.doi.org/10.1186/2042-1001-2-7 |
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