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Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization
In contrast to most other sensory modalities, the basic perceptual dimensions of olfaction remain unclear. Here, we use non-negative matrix factorization (NMF) – a dimensionality reduction technique – to uncover structure in a panel of odor profiles, with each odor defined as a point in multi-dimens...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776812/ https://www.ncbi.nlm.nih.gov/pubmed/24058466 http://dx.doi.org/10.1371/journal.pone.0073289 |
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author | Castro, Jason B. Ramanathan, Arvind Chennubhotla, Chakra S. |
author_facet | Castro, Jason B. Ramanathan, Arvind Chennubhotla, Chakra S. |
author_sort | Castro, Jason B. |
collection | PubMed |
description | In contrast to most other sensory modalities, the basic perceptual dimensions of olfaction remain unclear. Here, we use non-negative matrix factorization (NMF) – a dimensionality reduction technique – to uncover structure in a panel of odor profiles, with each odor defined as a point in multi-dimensional descriptor space. The properties of NMF are favorable for the analysis of such lexical and perceptual data, and lead to a high-dimensional account of odor space. We further provide evidence that odor dimensions apply categorically. That is, odor space is not occupied homogenously, but rather in a discrete and intrinsically clustered manner. We discuss the potential implications of these results for the neural coding of odors, as well as for developing classifiers on larger datasets that may be useful for predicting perceptual qualities from chemical structures. |
format | Online Article Text |
id | pubmed-3776812 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-37768122013-09-20 Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization Castro, Jason B. Ramanathan, Arvind Chennubhotla, Chakra S. PLoS One Research Article In contrast to most other sensory modalities, the basic perceptual dimensions of olfaction remain unclear. Here, we use non-negative matrix factorization (NMF) – a dimensionality reduction technique – to uncover structure in a panel of odor profiles, with each odor defined as a point in multi-dimensional descriptor space. The properties of NMF are favorable for the analysis of such lexical and perceptual data, and lead to a high-dimensional account of odor space. We further provide evidence that odor dimensions apply categorically. That is, odor space is not occupied homogenously, but rather in a discrete and intrinsically clustered manner. We discuss the potential implications of these results for the neural coding of odors, as well as for developing classifiers on larger datasets that may be useful for predicting perceptual qualities from chemical structures. Public Library of Science 2013-09-18 /pmc/articles/PMC3776812/ /pubmed/24058466 http://dx.doi.org/10.1371/journal.pone.0073289 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. |
spellingShingle | Research Article Castro, Jason B. Ramanathan, Arvind Chennubhotla, Chakra S. Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title | Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title_full | Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title_fullStr | Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title_full_unstemmed | Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title_short | Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization |
title_sort | categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776812/ https://www.ncbi.nlm.nih.gov/pubmed/24058466 http://dx.doi.org/10.1371/journal.pone.0073289 |
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