Population Expansion and Genetic Structure in Carcharhinus brevipinna in the Southern Indo-Pacific

BACKGROUND: Quantifying genetic diversity and metapopulation structure provides insights into the evolutionary history of a species and helps develop appropriate management strategies. We provide the first assessment of genetic structure in spinner sharks (Carcharhinus brevipinna), a large cosmopolitan carcharhinid, sampled from eastern and northern Australia and South Africa. METHODS AND FINDINGS: Sequencing of the mitochondrial DNA NADH dehydrogenase subunit 4 gene for 430 individuals revealed 37 haplotypes and moderately high haplotype diversity (h = 0.6770 ±0.025). While two metrics of genetic divergence (Φ(ST) and F (ST)) revealed somewhat different results, subdivision was detected between South Africa and all Australian locations (pairwise Φ(ST), range 0.02717–0.03508, p values ≤ 0.0013; pairwise F (ST) South Africa vs New South Wales = 0.04056, p = 0.0008). Evidence for fine-scale genetic structuring was also detected along Australia’s east coast (pairwise Φ(ST) = 0.01328, p < 0.015), and between south-eastern and northern locations (pairwise Φ(ST) = 0.00669, p < 0.04). CONCLUSIONS: The Indian Ocean represents a robust barrier to contemporary gene flow in C. brevipinna between Australia and South Africa. Gene flow also appears restricted along a continuous continental margin in this species, with data tentatively suggesting the delineation of two management units within Australian waters. Further sampling, however, is required for a more robust evaluation of the latter finding. Evidence indicates that all sampled populations were shaped by a substantial demographic expansion event, with the resultant high genetic diversity being cause for optimism when considering conservation of this commercially-targeted species in the southern Indo-Pacific.