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Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis

Neutron protein crystallography (NPC) is a powerful tool for determining the hydrogen position and water orientation in proteins, but a much larger protein crystal is needed for NPC than for X-ray crystallography, and thus crystal preparation is a bottleneck. To obtain large protein crystals, it is...

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Autores principales: Nakamura, Akihiko, Ishida, Takuya, Fushinobu, Shinya, Kusaka, Katsuhiro, Tanaka, Ichiro, Inaka, Koji, Higuchi, Yoshiki, Masaki, Mika, Ohta, Kazunori, Kaneko, Satoshi, Niimura, Nobuo, Igarashi, Kiyohiko, Samajima, Masahiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795544/
https://www.ncbi.nlm.nih.gov/pubmed/24121328
http://dx.doi.org/10.1107/S0909049513020943
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author Nakamura, Akihiko
Ishida, Takuya
Fushinobu, Shinya
Kusaka, Katsuhiro
Tanaka, Ichiro
Inaka, Koji
Higuchi, Yoshiki
Masaki, Mika
Ohta, Kazunori
Kaneko, Satoshi
Niimura, Nobuo
Igarashi, Kiyohiko
Samajima, Masahiro
author_facet Nakamura, Akihiko
Ishida, Takuya
Fushinobu, Shinya
Kusaka, Katsuhiro
Tanaka, Ichiro
Inaka, Koji
Higuchi, Yoshiki
Masaki, Mika
Ohta, Kazunori
Kaneko, Satoshi
Niimura, Nobuo
Igarashi, Kiyohiko
Samajima, Masahiro
author_sort Nakamura, Akihiko
collection PubMed
description Neutron protein crystallography (NPC) is a powerful tool for determining the hydrogen position and water orientation in proteins, but a much larger protein crystal is needed for NPC than for X-ray crystallography, and thus crystal preparation is a bottleneck. To obtain large protein crystals, it is necessary to know the properties of the target protein in the crystallization solution. Here, a crystal preparation method of fungal cellulase PcCel45A is reported, guided by the phase diagram. Nucleation and precipitation conditions were determined by sitting-drop vapor diffusion. Saturation and unsaturation conditions were evaluated by monitoring crystal dissolution, and a crystallization phase diagram was obtained. To obtain a large crystal, crystallization solution was prepared on a sitting bridge (diameter = 5 mm). Initial crystallization conditions were 40 µl of crystallization solution (40 mg ml(−1) protein with 30.5% 3-methyl-1,5-pentanediol in 50 mM tris-HCl pH 8.0) with a 1000 µl reservoir (61% 3-methyl-1,5,-pentanediol in 50 mM tris-HCl pH 8.0) at 293 K. After the first crystal appeared, the concentration of precipitant in the reservoir solution was reduced to 60% to prevent formation of further crystals. Finally, we obtained a crystal of 6 mm(3) volume (3 mm × 2 mm × 1 mm), which was suitable for neutron diffraction.
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spelling pubmed-37955442013-10-15 Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis Nakamura, Akihiko Ishida, Takuya Fushinobu, Shinya Kusaka, Katsuhiro Tanaka, Ichiro Inaka, Koji Higuchi, Yoshiki Masaki, Mika Ohta, Kazunori Kaneko, Satoshi Niimura, Nobuo Igarashi, Kiyohiko Samajima, Masahiro J Synchrotron Radiat Diffraction Structural Biology Neutron protein crystallography (NPC) is a powerful tool for determining the hydrogen position and water orientation in proteins, but a much larger protein crystal is needed for NPC than for X-ray crystallography, and thus crystal preparation is a bottleneck. To obtain large protein crystals, it is necessary to know the properties of the target protein in the crystallization solution. Here, a crystal preparation method of fungal cellulase PcCel45A is reported, guided by the phase diagram. Nucleation and precipitation conditions were determined by sitting-drop vapor diffusion. Saturation and unsaturation conditions were evaluated by monitoring crystal dissolution, and a crystallization phase diagram was obtained. To obtain a large crystal, crystallization solution was prepared on a sitting bridge (diameter = 5 mm). Initial crystallization conditions were 40 µl of crystallization solution (40 mg ml(−1) protein with 30.5% 3-methyl-1,5-pentanediol in 50 mM tris-HCl pH 8.0) with a 1000 µl reservoir (61% 3-methyl-1,5,-pentanediol in 50 mM tris-HCl pH 8.0) at 293 K. After the first crystal appeared, the concentration of precipitant in the reservoir solution was reduced to 60% to prevent formation of further crystals. Finally, we obtained a crystal of 6 mm(3) volume (3 mm × 2 mm × 1 mm), which was suitable for neutron diffraction. International Union of Crystallography 2013-11-01 2013-09-25 /pmc/articles/PMC3795544/ /pubmed/24121328 http://dx.doi.org/10.1107/S0909049513020943 Text en © Akihiko Nakamura et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Diffraction Structural Biology
Nakamura, Akihiko
Ishida, Takuya
Fushinobu, Shinya
Kusaka, Katsuhiro
Tanaka, Ichiro
Inaka, Koji
Higuchi, Yoshiki
Masaki, Mika
Ohta, Kazunori
Kaneko, Satoshi
Niimura, Nobuo
Igarashi, Kiyohiko
Samajima, Masahiro
Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title_full Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title_fullStr Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title_full_unstemmed Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title_short Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
title_sort phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis
topic Diffraction Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795544/
https://www.ncbi.nlm.nih.gov/pubmed/24121328
http://dx.doi.org/10.1107/S0909049513020943
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