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Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline

Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolec...

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Autores principales: Shimizu, Nobutaka, Shimizu, Tetsuya, Baba, Seiki, Hasegawa, Kazuya, Yamamoto, Masaki, Kumasaka, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795562/
https://www.ncbi.nlm.nih.gov/pubmed/24121346
http://dx.doi.org/10.1107/S0909049513022887
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author Shimizu, Nobutaka
Shimizu, Tetsuya
Baba, Seiki
Hasegawa, Kazuya
Yamamoto, Masaki
Kumasaka, Takashi
author_facet Shimizu, Nobutaka
Shimizu, Tetsuya
Baba, Seiki
Hasegawa, Kazuya
Yamamoto, Masaki
Kumasaka, Takashi
author_sort Shimizu, Nobutaka
collection PubMed
description Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolecular crystallography beamline, BL38B1, at SPring-8. This spectrophotometer is equipped with a difference dispersive double monochromator, a mercury–xenon lamp as the light source, and a photomultiplier as the detector. The optical path is mostly constructed using mirrors, in order to obtain high brightness in the UV region, and the confocal optics are assembled using a cross-slit diaphragm like an iris to eliminate stray light. This system can measure optical densities up to a maximum of 4.0. To study the effect of radiation damage, preliminary measurements of glucose isomerase and thaumatin crystals were conducted in the UV region. Spectral changes dependent on X-ray dose were observed at around 280 nm, suggesting that structural changes involving Trp or Tyr residues occurred in the protein crystal. In the case of the thaumatin crystal, a broad peak around 400 nm was also generated after X-ray irradiation, suggesting the cleavage of a disulfide bond. Dose-dependent spectral changes were also observed in cryo-solutions alone, and these changes differed with the composition of the cryo-solution. These responses in the UV region are informative regarding the state of the sample; consequently, this device might be useful for X-ray crystallography.
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spelling pubmed-37955622013-10-15 Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline Shimizu, Nobutaka Shimizu, Tetsuya Baba, Seiki Hasegawa, Kazuya Yamamoto, Masaki Kumasaka, Takashi J Synchrotron Radiat Diffraction Structural Biology Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolecular crystallography beamline, BL38B1, at SPring-8. This spectrophotometer is equipped with a difference dispersive double monochromator, a mercury–xenon lamp as the light source, and a photomultiplier as the detector. The optical path is mostly constructed using mirrors, in order to obtain high brightness in the UV region, and the confocal optics are assembled using a cross-slit diaphragm like an iris to eliminate stray light. This system can measure optical densities up to a maximum of 4.0. To study the effect of radiation damage, preliminary measurements of glucose isomerase and thaumatin crystals were conducted in the UV region. Spectral changes dependent on X-ray dose were observed at around 280 nm, suggesting that structural changes involving Trp or Tyr residues occurred in the protein crystal. In the case of the thaumatin crystal, a broad peak around 400 nm was also generated after X-ray irradiation, suggesting the cleavage of a disulfide bond. Dose-dependent spectral changes were also observed in cryo-solutions alone, and these changes differed with the composition of the cryo-solution. These responses in the UV region are informative regarding the state of the sample; consequently, this device might be useful for X-ray crystallography. International Union of Crystallography 2013-11-01 2013-10-02 /pmc/articles/PMC3795562/ /pubmed/24121346 http://dx.doi.org/10.1107/S0909049513022887 Text en © Nobutaka Shimizu et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Diffraction Structural Biology
Shimizu, Nobutaka
Shimizu, Tetsuya
Baba, Seiki
Hasegawa, Kazuya
Yamamoto, Masaki
Kumasaka, Takashi
Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title_full Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title_fullStr Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title_full_unstemmed Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title_short Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
title_sort development of an online uv–visible microspectrophotometer for a macromolecular crystallography beamline
topic Diffraction Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795562/
https://www.ncbi.nlm.nih.gov/pubmed/24121346
http://dx.doi.org/10.1107/S0909049513022887
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