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Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline
Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolec...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795562/ https://www.ncbi.nlm.nih.gov/pubmed/24121346 http://dx.doi.org/10.1107/S0909049513022887 |
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author | Shimizu, Nobutaka Shimizu, Tetsuya Baba, Seiki Hasegawa, Kazuya Yamamoto, Masaki Kumasaka, Takashi |
author_facet | Shimizu, Nobutaka Shimizu, Tetsuya Baba, Seiki Hasegawa, Kazuya Yamamoto, Masaki Kumasaka, Takashi |
author_sort | Shimizu, Nobutaka |
collection | PubMed |
description | Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolecular crystallography beamline, BL38B1, at SPring-8. This spectrophotometer is equipped with a difference dispersive double monochromator, a mercury–xenon lamp as the light source, and a photomultiplier as the detector. The optical path is mostly constructed using mirrors, in order to obtain high brightness in the UV region, and the confocal optics are assembled using a cross-slit diaphragm like an iris to eliminate stray light. This system can measure optical densities up to a maximum of 4.0. To study the effect of radiation damage, preliminary measurements of glucose isomerase and thaumatin crystals were conducted in the UV region. Spectral changes dependent on X-ray dose were observed at around 280 nm, suggesting that structural changes involving Trp or Tyr residues occurred in the protein crystal. In the case of the thaumatin crystal, a broad peak around 400 nm was also generated after X-ray irradiation, suggesting the cleavage of a disulfide bond. Dose-dependent spectral changes were also observed in cryo-solutions alone, and these changes differed with the composition of the cryo-solution. These responses in the UV region are informative regarding the state of the sample; consequently, this device might be useful for X-ray crystallography. |
format | Online Article Text |
id | pubmed-3795562 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-37955622013-10-15 Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline Shimizu, Nobutaka Shimizu, Tetsuya Baba, Seiki Hasegawa, Kazuya Yamamoto, Masaki Kumasaka, Takashi J Synchrotron Radiat Diffraction Structural Biology Measurement of the UV–visible absorption spectrum is a convenient technique for detecting chemical changes of proteins, and it is therefore useful to combine spectroscopy and diffraction studies. An online microspectrophotometer for the UV–visible region was developed and installed on the macromolecular crystallography beamline, BL38B1, at SPring-8. This spectrophotometer is equipped with a difference dispersive double monochromator, a mercury–xenon lamp as the light source, and a photomultiplier as the detector. The optical path is mostly constructed using mirrors, in order to obtain high brightness in the UV region, and the confocal optics are assembled using a cross-slit diaphragm like an iris to eliminate stray light. This system can measure optical densities up to a maximum of 4.0. To study the effect of radiation damage, preliminary measurements of glucose isomerase and thaumatin crystals were conducted in the UV region. Spectral changes dependent on X-ray dose were observed at around 280 nm, suggesting that structural changes involving Trp or Tyr residues occurred in the protein crystal. In the case of the thaumatin crystal, a broad peak around 400 nm was also generated after X-ray irradiation, suggesting the cleavage of a disulfide bond. Dose-dependent spectral changes were also observed in cryo-solutions alone, and these changes differed with the composition of the cryo-solution. These responses in the UV region are informative regarding the state of the sample; consequently, this device might be useful for X-ray crystallography. International Union of Crystallography 2013-11-01 2013-10-02 /pmc/articles/PMC3795562/ /pubmed/24121346 http://dx.doi.org/10.1107/S0909049513022887 Text en © Nobutaka Shimizu et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Diffraction Structural Biology Shimizu, Nobutaka Shimizu, Tetsuya Baba, Seiki Hasegawa, Kazuya Yamamoto, Masaki Kumasaka, Takashi Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title | Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title_full | Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title_fullStr | Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title_full_unstemmed | Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title_short | Development of an online UV–visible microspectrophotometer for a macromolecular crystallography beamline |
title_sort | development of an online uv–visible microspectrophotometer for a macromolecular crystallography beamline |
topic | Diffraction Structural Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795562/ https://www.ncbi.nlm.nih.gov/pubmed/24121346 http://dx.doi.org/10.1107/S0909049513022887 |
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