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Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecu...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795573/ https://www.ncbi.nlm.nih.gov/pubmed/24121357 http://dx.doi.org/10.1107/S0909049513022784 |
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author | Tanaka, Hiroaki Sasaki, Susumu Takahashi, Sachiko Inaka, Koji Wada, Yoshio Yamada, Mitsugu Ohta, Kazunori Miyoshi, Hiroshi Kobayashi, Tomoyuki Kamigaichi, Shigeki |
author_facet | Tanaka, Hiroaki Sasaki, Susumu Takahashi, Sachiko Inaka, Koji Wada, Yoshio Yamada, Mitsugu Ohta, Kazunori Miyoshi, Hiroshi Kobayashi, Tomoyuki Kamigaichi, Shigeki |
author_sort | Tanaka, Hiroaki |
collection | PubMed |
description | It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecules into a crystal largely depends on diffusive transport, so the incorporated molecules will be allocated in an orderly manner and the impurity uptake will be suppressed, resulting in highly ordered crystals. Previously, these effects were numerically studied in a steady state using a simplified model and it was determined that the combination of the diffusion coefficient of the protein molecule (D) and the kinetic constant for the protein molecule (β) could be used as an index of the extent of these depletion zones. In this report, numerical analysis of these depletion zones around a growing crystal in a non-steady (i.e. transient) state is introduced, suggesting that this model may be used for the quantitative analysis of these depletion zones in the microgravity environment. |
format | Online Article Text |
id | pubmed-3795573 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-37955732013-10-15 Numerical model of protein crystal growth in a diffusive field such as the microgravity environment Tanaka, Hiroaki Sasaki, Susumu Takahashi, Sachiko Inaka, Koji Wada, Yoshio Yamada, Mitsugu Ohta, Kazunori Miyoshi, Hiroshi Kobayashi, Tomoyuki Kamigaichi, Shigeki J Synchrotron Radiat Diffraction Structural Biology It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecules into a crystal largely depends on diffusive transport, so the incorporated molecules will be allocated in an orderly manner and the impurity uptake will be suppressed, resulting in highly ordered crystals. Previously, these effects were numerically studied in a steady state using a simplified model and it was determined that the combination of the diffusion coefficient of the protein molecule (D) and the kinetic constant for the protein molecule (β) could be used as an index of the extent of these depletion zones. In this report, numerical analysis of these depletion zones around a growing crystal in a non-steady (i.e. transient) state is introduced, suggesting that this model may be used for the quantitative analysis of these depletion zones in the microgravity environment. International Union of Crystallography 2013-11-01 2013-10-01 /pmc/articles/PMC3795573/ /pubmed/24121357 http://dx.doi.org/10.1107/S0909049513022784 Text en © Hiroaki Tanaka et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Diffraction Structural Biology Tanaka, Hiroaki Sasaki, Susumu Takahashi, Sachiko Inaka, Koji Wada, Yoshio Yamada, Mitsugu Ohta, Kazunori Miyoshi, Hiroshi Kobayashi, Tomoyuki Kamigaichi, Shigeki Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title | Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title_full | Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title_fullStr | Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title_full_unstemmed | Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title_short | Numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
title_sort | numerical model of protein crystal growth in a diffusive field such as the microgravity environment |
topic | Diffraction Structural Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795573/ https://www.ncbi.nlm.nih.gov/pubmed/24121357 http://dx.doi.org/10.1107/S0909049513022784 |
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