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Numerical model of protein crystal growth in a diffusive field such as the microgravity environment

It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecu...

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Autores principales: Tanaka, Hiroaki, Sasaki, Susumu, Takahashi, Sachiko, Inaka, Koji, Wada, Yoshio, Yamada, Mitsugu, Ohta, Kazunori, Miyoshi, Hiroshi, Kobayashi, Tomoyuki, Kamigaichi, Shigeki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795573/
https://www.ncbi.nlm.nih.gov/pubmed/24121357
http://dx.doi.org/10.1107/S0909049513022784
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author Tanaka, Hiroaki
Sasaki, Susumu
Takahashi, Sachiko
Inaka, Koji
Wada, Yoshio
Yamada, Mitsugu
Ohta, Kazunori
Miyoshi, Hiroshi
Kobayashi, Tomoyuki
Kamigaichi, Shigeki
author_facet Tanaka, Hiroaki
Sasaki, Susumu
Takahashi, Sachiko
Inaka, Koji
Wada, Yoshio
Yamada, Mitsugu
Ohta, Kazunori
Miyoshi, Hiroshi
Kobayashi, Tomoyuki
Kamigaichi, Shigeki
author_sort Tanaka, Hiroaki
collection PubMed
description It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecules into a crystal largely depends on diffusive transport, so the incorporated molecules will be allocated in an orderly manner and the impurity uptake will be suppressed, resulting in highly ordered crystals. Previously, these effects were numerically studied in a steady state using a simplified model and it was determined that the combination of the diffusion coefficient of the protein molecule (D) and the kinetic constant for the protein molecule (β) could be used as an index of the extent of these depletion zones. In this report, numerical analysis of these depletion zones around a growing crystal in a non-steady (i.e. transient) state is introduced, suggesting that this model may be used for the quantitative analysis of these depletion zones in the microgravity environment.
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spelling pubmed-37955732013-10-15 Numerical model of protein crystal growth in a diffusive field such as the microgravity environment Tanaka, Hiroaki Sasaki, Susumu Takahashi, Sachiko Inaka, Koji Wada, Yoshio Yamada, Mitsugu Ohta, Kazunori Miyoshi, Hiroshi Kobayashi, Tomoyuki Kamigaichi, Shigeki J Synchrotron Radiat Diffraction Structural Biology It is said that the microgravity environment positively affects the quality of protein crystal growth. The formation of a protein depletion zone and an impurity depletion zone due to the suppression of convection flow were thought to be the major reasons. In microgravity, the incorporation of molecules into a crystal largely depends on diffusive transport, so the incorporated molecules will be allocated in an orderly manner and the impurity uptake will be suppressed, resulting in highly ordered crystals. Previously, these effects were numerically studied in a steady state using a simplified model and it was determined that the combination of the diffusion coefficient of the protein molecule (D) and the kinetic constant for the protein molecule (β) could be used as an index of the extent of these depletion zones. In this report, numerical analysis of these depletion zones around a growing crystal in a non-steady (i.e. transient) state is introduced, suggesting that this model may be used for the quantitative analysis of these depletion zones in the microgravity environment. International Union of Crystallography 2013-11-01 2013-10-01 /pmc/articles/PMC3795573/ /pubmed/24121357 http://dx.doi.org/10.1107/S0909049513022784 Text en © Hiroaki Tanaka et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Diffraction Structural Biology
Tanaka, Hiroaki
Sasaki, Susumu
Takahashi, Sachiko
Inaka, Koji
Wada, Yoshio
Yamada, Mitsugu
Ohta, Kazunori
Miyoshi, Hiroshi
Kobayashi, Tomoyuki
Kamigaichi, Shigeki
Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title_full Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title_fullStr Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title_full_unstemmed Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title_short Numerical model of protein crystal growth in a diffusive field such as the microgravity environment
title_sort numerical model of protein crystal growth in a diffusive field such as the microgravity environment
topic Diffraction Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795573/
https://www.ncbi.nlm.nih.gov/pubmed/24121357
http://dx.doi.org/10.1107/S0909049513022784
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