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The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model

Discretization of a geographical region is quite common in spatial analysis. There have been few studies into the impact of different geographical scales on the outcome of spatial models for different spatial patterns. This study aims to investigate the impact of spatial scales and spatial smoothing...

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Detalles Bibliográficos
Autores principales: Kang, Su Yun, McGree, James, Mengersen, Kerrie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795684/
https://www.ncbi.nlm.nih.gov/pubmed/24146799
http://dx.doi.org/10.1371/journal.pone.0075957
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author Kang, Su Yun
McGree, James
Mengersen, Kerrie
author_facet Kang, Su Yun
McGree, James
Mengersen, Kerrie
author_sort Kang, Su Yun
collection PubMed
description Discretization of a geographical region is quite common in spatial analysis. There have been few studies into the impact of different geographical scales on the outcome of spatial models for different spatial patterns. This study aims to investigate the impact of spatial scales and spatial smoothing on the outcomes of modelling spatial point-based data. Given a spatial point-based dataset (such as occurrence of a disease), we study the geographical variation of residual disease risk using regular grid cells. The individual disease risk is modelled using a logistic model with the inclusion of spatially unstructured and/or spatially structured random effects. Three spatial smoothness priors for the spatially structured component are employed in modelling, namely an intrinsic Gaussian Markov random field, a second-order random walk on a lattice, and a Gaussian field with Matérn correlation function. We investigate how changes in grid cell size affect model outcomes under different spatial structures and different smoothness priors for the spatial component. A realistic example (the Humberside data) is analyzed and a simulation study is described. Bayesian computation is carried out using an integrated nested Laplace approximation. The results suggest that the performance and predictive capacity of the spatial models improve as the grid cell size decreases for certain spatial structures. It also appears that different spatial smoothness priors should be applied for different patterns of point data.
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spelling pubmed-37956842013-10-21 The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model Kang, Su Yun McGree, James Mengersen, Kerrie PLoS One Research Article Discretization of a geographical region is quite common in spatial analysis. There have been few studies into the impact of different geographical scales on the outcome of spatial models for different spatial patterns. This study aims to investigate the impact of spatial scales and spatial smoothing on the outcomes of modelling spatial point-based data. Given a spatial point-based dataset (such as occurrence of a disease), we study the geographical variation of residual disease risk using regular grid cells. The individual disease risk is modelled using a logistic model with the inclusion of spatially unstructured and/or spatially structured random effects. Three spatial smoothness priors for the spatially structured component are employed in modelling, namely an intrinsic Gaussian Markov random field, a second-order random walk on a lattice, and a Gaussian field with Matérn correlation function. We investigate how changes in grid cell size affect model outcomes under different spatial structures and different smoothness priors for the spatial component. A realistic example (the Humberside data) is analyzed and a simulation study is described. Bayesian computation is carried out using an integrated nested Laplace approximation. The results suggest that the performance and predictive capacity of the spatial models improve as the grid cell size decreases for certain spatial structures. It also appears that different spatial smoothness priors should be applied for different patterns of point data. Public Library of Science 2013-10-11 /pmc/articles/PMC3795684/ /pubmed/24146799 http://dx.doi.org/10.1371/journal.pone.0075957 Text en © 2013 Kang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Kang, Su Yun
McGree, James
Mengersen, Kerrie
The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title_full The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title_fullStr The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title_full_unstemmed The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title_short The Impact of Spatial Scales and Spatial Smoothing on the Outcome of Bayesian Spatial Model
title_sort impact of spatial scales and spatial smoothing on the outcome of bayesian spatial model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795684/
https://www.ncbi.nlm.nih.gov/pubmed/24146799
http://dx.doi.org/10.1371/journal.pone.0075957
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