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Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization
Community detection is important for understanding networks. Previous studies observed that communities are not necessarily disjoint and might overlap. It is also agreed that some outlier vertices participate in no community, and some hubs in a community might take more important roles than others....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3797436/ https://www.ncbi.nlm.nih.gov/pubmed/24129402 http://dx.doi.org/10.1038/srep02993 |
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author | Cao, Xiaochun Wang, Xiao Jin, Di Cao, Yixin He, Dongxiao |
author_facet | Cao, Xiaochun Wang, Xiao Jin, Di Cao, Yixin He, Dongxiao |
author_sort | Cao, Xiaochun |
collection | PubMed |
description | Community detection is important for understanding networks. Previous studies observed that communities are not necessarily disjoint and might overlap. It is also agreed that some outlier vertices participate in no community, and some hubs in a community might take more important roles than others. Each of these facts has been independently addressed in previous work. But there is no algorithm, to our knowledge, that can identify these three structures altogether. To overcome this limitation, we propose a novel model where vertices are measured by their centrality in communities, and define the identification of overlapping communities, hubs, and outliers as an optimization problem, calculated by nonnegative matrix factorization. We test this method on various real networks, and compare it with several competing algorithms. The experimental results not only demonstrate its ability of identifying overlapping communities, hubs, and outliers, but also validate its superior performance in terms of clustering quality. |
format | Online Article Text |
id | pubmed-3797436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-37974362013-10-21 Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization Cao, Xiaochun Wang, Xiao Jin, Di Cao, Yixin He, Dongxiao Sci Rep Article Community detection is important for understanding networks. Previous studies observed that communities are not necessarily disjoint and might overlap. It is also agreed that some outlier vertices participate in no community, and some hubs in a community might take more important roles than others. Each of these facts has been independently addressed in previous work. But there is no algorithm, to our knowledge, that can identify these three structures altogether. To overcome this limitation, we propose a novel model where vertices are measured by their centrality in communities, and define the identification of overlapping communities, hubs, and outliers as an optimization problem, calculated by nonnegative matrix factorization. We test this method on various real networks, and compare it with several competing algorithms. The experimental results not only demonstrate its ability of identifying overlapping communities, hubs, and outliers, but also validate its superior performance in terms of clustering quality. Nature Publishing Group 2013-10-21 /pmc/articles/PMC3797436/ /pubmed/24129402 http://dx.doi.org/10.1038/srep02993 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Article Cao, Xiaochun Wang, Xiao Jin, Di Cao, Yixin He, Dongxiao Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title | Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title_full | Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title_fullStr | Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title_full_unstemmed | Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title_short | Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
title_sort | identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3797436/ https://www.ncbi.nlm.nih.gov/pubmed/24129402 http://dx.doi.org/10.1038/srep02993 |
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