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On Crowd-verification of Biological Networks

Biological networks with a structured syntax are a powerful way of representing biological information generated from high density data; however, they can become unwieldy to manage as their size and complexity increase. This article presents a crowd-verification approach for the visualization and ex...

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Autores principales: Ansari, Sam, Binder, Jean, Boue, Stephanie, Di Fabio, Anselmo, Hayes, William, Hoeng, Julia, Iskandar, Anita, Kleiman, Robin, Norel, Raquel, O’Neel, Bruce, Peitsch, Manuel C., Poussin, Carine, Pratt, Dexter, Rhrissorrakrai, Kahn, Schlage, Walter K., Stolovitzky, Gustavo, Talikka, Marja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Libertas Academica 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798292/
https://www.ncbi.nlm.nih.gov/pubmed/24151423
http://dx.doi.org/10.4137/BBI.S12932
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author Ansari, Sam
Binder, Jean
Boue, Stephanie
Di Fabio, Anselmo
Hayes, William
Hoeng, Julia
Iskandar, Anita
Kleiman, Robin
Norel, Raquel
O’Neel, Bruce
Peitsch, Manuel C.
Poussin, Carine
Pratt, Dexter
Rhrissorrakrai, Kahn
Schlage, Walter K.
Stolovitzky, Gustavo
Talikka, Marja
author_facet Ansari, Sam
Binder, Jean
Boue, Stephanie
Di Fabio, Anselmo
Hayes, William
Hoeng, Julia
Iskandar, Anita
Kleiman, Robin
Norel, Raquel
O’Neel, Bruce
Peitsch, Manuel C.
Poussin, Carine
Pratt, Dexter
Rhrissorrakrai, Kahn
Schlage, Walter K.
Stolovitzky, Gustavo
Talikka, Marja
collection PubMed
description Biological networks with a structured syntax are a powerful way of representing biological information generated from high density data; however, they can become unwieldy to manage as their size and complexity increase. This article presents a crowd-verification approach for the visualization and expansion of biological networks. Web-based graphical interfaces allow visualization of causal and correlative biological relationships represented using Biological Expression Language (BEL). Crowdsourcing principles enable participants to communally annotate these relationships based on literature evidences. Gamification principles are incorporated to further engage domain experts throughout biology to gather robust peer-reviewed information from which relationships can be identified and verified. The resulting network models will represent the current status of biological knowledge within the defined boundaries, here processes related to human lung disease. These models are amenable to computational analysis. For some period following conclusion of the challenge, the published models will remain available for continuous use and expansion by the scientific community.
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spelling pubmed-37982922013-10-22 On Crowd-verification of Biological Networks Ansari, Sam Binder, Jean Boue, Stephanie Di Fabio, Anselmo Hayes, William Hoeng, Julia Iskandar, Anita Kleiman, Robin Norel, Raquel O’Neel, Bruce Peitsch, Manuel C. Poussin, Carine Pratt, Dexter Rhrissorrakrai, Kahn Schlage, Walter K. Stolovitzky, Gustavo Talikka, Marja Bioinform Biol Insights Original Research Biological networks with a structured syntax are a powerful way of representing biological information generated from high density data; however, they can become unwieldy to manage as their size and complexity increase. This article presents a crowd-verification approach for the visualization and expansion of biological networks. Web-based graphical interfaces allow visualization of causal and correlative biological relationships represented using Biological Expression Language (BEL). Crowdsourcing principles enable participants to communally annotate these relationships based on literature evidences. Gamification principles are incorporated to further engage domain experts throughout biology to gather robust peer-reviewed information from which relationships can be identified and verified. The resulting network models will represent the current status of biological knowledge within the defined boundaries, here processes related to human lung disease. These models are amenable to computational analysis. For some period following conclusion of the challenge, the published models will remain available for continuous use and expansion by the scientific community. Libertas Academica 2013-10-10 /pmc/articles/PMC3798292/ /pubmed/24151423 http://dx.doi.org/10.4137/BBI.S12932 Text en © 2013 the author(s), publisher and licensee Libertas Academica Ltd. This is an open access article published under the Creative Commons CC-BY-NC 3.0 license.
spellingShingle Original Research
Ansari, Sam
Binder, Jean
Boue, Stephanie
Di Fabio, Anselmo
Hayes, William
Hoeng, Julia
Iskandar, Anita
Kleiman, Robin
Norel, Raquel
O’Neel, Bruce
Peitsch, Manuel C.
Poussin, Carine
Pratt, Dexter
Rhrissorrakrai, Kahn
Schlage, Walter K.
Stolovitzky, Gustavo
Talikka, Marja
On Crowd-verification of Biological Networks
title On Crowd-verification of Biological Networks
title_full On Crowd-verification of Biological Networks
title_fullStr On Crowd-verification of Biological Networks
title_full_unstemmed On Crowd-verification of Biological Networks
title_short On Crowd-verification of Biological Networks
title_sort on crowd-verification of biological networks
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798292/
https://www.ncbi.nlm.nih.gov/pubmed/24151423
http://dx.doi.org/10.4137/BBI.S12932
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