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Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity
Structure and dynamics of water remain a challenge. Resolving the properties of hydrogen bonding lies at the heart of this puzzle. We employ ab initio Molecular Dynamics (AIMD) simulations over a wide temperature range. The total simulation time was ≈ 2 ns. Both bulk water and water in the presence...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3801114/ https://www.ncbi.nlm.nih.gov/pubmed/24141934 http://dx.doi.org/10.1038/srep02991 |
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author | Titantah, John Tatini Karttunen, Mikko |
author_facet | Titantah, John Tatini Karttunen, Mikko |
author_sort | Titantah, John Tatini |
collection | PubMed |
description | Structure and dynamics of water remain a challenge. Resolving the properties of hydrogen bonding lies at the heart of this puzzle. We employ ab initio Molecular Dynamics (AIMD) simulations over a wide temperature range. The total simulation time was ≈ 2 ns. Both bulk water and water in the presence of a small hydrophobic molecule were simulated. We show that large-angle jumps and bond bifurcations are fundamental properties of water dynamics and that they are intimately coupled to both local density and hydrogen bond strength oscillations in scales from about 60 to a few hundred femtoseconds: Local density differences are the driving force for bond bifurcations and the consequent large-angle jumps. The jumps are intimately connected to the recently predicted hydrogen bond energy asymmetry. Our analysis also appears to confirm the existence of the so-called negativity track provided by the lone pairs of electrons on the oxygen atom to enable water rotation. |
format | Online Article Text |
id | pubmed-3801114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-38011142013-10-21 Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity Titantah, John Tatini Karttunen, Mikko Sci Rep Article Structure and dynamics of water remain a challenge. Resolving the properties of hydrogen bonding lies at the heart of this puzzle. We employ ab initio Molecular Dynamics (AIMD) simulations over a wide temperature range. The total simulation time was ≈ 2 ns. Both bulk water and water in the presence of a small hydrophobic molecule were simulated. We show that large-angle jumps and bond bifurcations are fundamental properties of water dynamics and that they are intimately coupled to both local density and hydrogen bond strength oscillations in scales from about 60 to a few hundred femtoseconds: Local density differences are the driving force for bond bifurcations and the consequent large-angle jumps. The jumps are intimately connected to the recently predicted hydrogen bond energy asymmetry. Our analysis also appears to confirm the existence of the so-called negativity track provided by the lone pairs of electrons on the oxygen atom to enable water rotation. Nature Publishing Group 2013-10-21 /pmc/articles/PMC3801114/ /pubmed/24141934 http://dx.doi.org/10.1038/srep02991 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareALike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ |
spellingShingle | Article Titantah, John Tatini Karttunen, Mikko Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title | Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title_full | Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title_fullStr | Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title_full_unstemmed | Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title_short | Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
title_sort | water dynamics: relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3801114/ https://www.ncbi.nlm.nih.gov/pubmed/24141934 http://dx.doi.org/10.1038/srep02991 |
work_keys_str_mv | AT titantahjohntatini waterdynamicsrelationbetweenhydrogenbondbifurcationsmolecularjumpslocaldensityhydrophobicity AT karttunenmikko waterdynamicsrelationbetweenhydrogenbondbifurcationsmolecularjumpslocaldensityhydrophobicity |