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Detecting functional connectivity change points for single-subject fMRI data
Recently in functional magnetic resonance imaging (fMRI) studies there has been an increased interest in understanding the dynamic manner in which brain regions communicate with one another, as subjects perform a set of experimental tasks or as their psychological state changes. Dynamic Connectivity...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812660/ https://www.ncbi.nlm.nih.gov/pubmed/24198781 http://dx.doi.org/10.3389/fncom.2013.00143 |
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author | Cribben, Ivor Wager, Tor D. Lindquist, Martin A. |
author_facet | Cribben, Ivor Wager, Tor D. Lindquist, Martin A. |
author_sort | Cribben, Ivor |
collection | PubMed |
description | Recently in functional magnetic resonance imaging (fMRI) studies there has been an increased interest in understanding the dynamic manner in which brain regions communicate with one another, as subjects perform a set of experimental tasks or as their psychological state changes. Dynamic Connectivity Regression (DCR) is a data-driven technique used for detecting temporal change points in functional connectivity between brain regions where the number and location of the change points are unknown a priori. After finding the change points, DCR estimates a graph or set of relationships between the brain regions for data that falls between pairs of change points. In previous work, the method was predominantly validated using multi-subject data. In this paper, we concentrate on single-subject data and introduce a new DCR algorithm. The new algorithm increases accuracy for individual subject data with a small number of observations and reduces the number of false positives in the estimated undirected graphs. We also introduce a new Likelihood Ratio test for comparing sparse graphs across (or within) subjects; thus allowing us to determine whether data should be combined across subjects. We perform an extensive simulation analysis on vector autoregression (VAR) data as well as to an fMRI data set from a study (n = 23) of a state anxiety induction using a socially evaluative threat challenge. The focus on single-subject data allows us to study the variation between individuals and may provide us with a deeper knowledge of the workings of the brain. |
format | Online Article Text |
id | pubmed-3812660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-38126602013-11-06 Detecting functional connectivity change points for single-subject fMRI data Cribben, Ivor Wager, Tor D. Lindquist, Martin A. Front Comput Neurosci Neuroscience Recently in functional magnetic resonance imaging (fMRI) studies there has been an increased interest in understanding the dynamic manner in which brain regions communicate with one another, as subjects perform a set of experimental tasks or as their psychological state changes. Dynamic Connectivity Regression (DCR) is a data-driven technique used for detecting temporal change points in functional connectivity between brain regions where the number and location of the change points are unknown a priori. After finding the change points, DCR estimates a graph or set of relationships between the brain regions for data that falls between pairs of change points. In previous work, the method was predominantly validated using multi-subject data. In this paper, we concentrate on single-subject data and introduce a new DCR algorithm. The new algorithm increases accuracy for individual subject data with a small number of observations and reduces the number of false positives in the estimated undirected graphs. We also introduce a new Likelihood Ratio test for comparing sparse graphs across (or within) subjects; thus allowing us to determine whether data should be combined across subjects. We perform an extensive simulation analysis on vector autoregression (VAR) data as well as to an fMRI data set from a study (n = 23) of a state anxiety induction using a socially evaluative threat challenge. The focus on single-subject data allows us to study the variation between individuals and may provide us with a deeper knowledge of the workings of the brain. Frontiers Media S.A. 2013-10-30 /pmc/articles/PMC3812660/ /pubmed/24198781 http://dx.doi.org/10.3389/fncom.2013.00143 Text en Copyright © 2013 Cribben, Wager and Lindquist. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Cribben, Ivor Wager, Tor D. Lindquist, Martin A. Detecting functional connectivity change points for single-subject fMRI data |
title | Detecting functional connectivity change points for single-subject fMRI data |
title_full | Detecting functional connectivity change points for single-subject fMRI data |
title_fullStr | Detecting functional connectivity change points for single-subject fMRI data |
title_full_unstemmed | Detecting functional connectivity change points for single-subject fMRI data |
title_short | Detecting functional connectivity change points for single-subject fMRI data |
title_sort | detecting functional connectivity change points for single-subject fmri data |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812660/ https://www.ncbi.nlm.nih.gov/pubmed/24198781 http://dx.doi.org/10.3389/fncom.2013.00143 |
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