Cargando…
Enzyme Reaction Annotation Using Cloud Techniques
An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reacti...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814047/ https://www.ncbi.nlm.nih.gov/pubmed/24222895 http://dx.doi.org/10.1155/2013/140237 |
_version_ | 1782289194762108928 |
---|---|
author | Huang, Chuan-Ching Lin, Chun-Yuan Chang, Cheng-Wen Tang, Chuan Yi |
author_facet | Huang, Chuan-Ching Lin, Chun-Yuan Chang, Cheng-Wen Tang, Chuan Yi |
author_sort | Huang, Chuan-Ching |
collection | PubMed |
description | An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reaction annotation. Because accurate enzyme reaction annotation methods create potential for enhanced production capacity in these applications, they have received greater attention in the global market. We propose the enzyme reaction prediction (ERP) method as a novel tool to deduce enzyme reactions from domain architecture. We used several frequency relationships between architectures and reactions to enhance the annotation rates for single and multiple catalyzed reactions. The deluge of information which arose from high-throughput techniques in the postgenomic era has improved our understanding of biological data, although it presents obstacles in the data-processing stage. The high computational capacity provided by cloud computing has resulted in an exponential growth in the volume of incoming data. Cloud services also relieve the requirement for large-scale memory space required by this approach to analyze enzyme kinetic data. Our tool is designed as a single execution file; thus, it could be applied to any cloud platform in which multiple queries are supported. |
format | Online Article Text |
id | pubmed-3814047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-38140472013-11-11 Enzyme Reaction Annotation Using Cloud Techniques Huang, Chuan-Ching Lin, Chun-Yuan Chang, Cheng-Wen Tang, Chuan Yi Biomed Res Int Research Article An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reaction annotation. Because accurate enzyme reaction annotation methods create potential for enhanced production capacity in these applications, they have received greater attention in the global market. We propose the enzyme reaction prediction (ERP) method as a novel tool to deduce enzyme reactions from domain architecture. We used several frequency relationships between architectures and reactions to enhance the annotation rates for single and multiple catalyzed reactions. The deluge of information which arose from high-throughput techniques in the postgenomic era has improved our understanding of biological data, although it presents obstacles in the data-processing stage. The high computational capacity provided by cloud computing has resulted in an exponential growth in the volume of incoming data. Cloud services also relieve the requirement for large-scale memory space required by this approach to analyze enzyme kinetic data. Our tool is designed as a single execution file; thus, it could be applied to any cloud platform in which multiple queries are supported. Hindawi Publishing Corporation 2013 2013-09-26 /pmc/articles/PMC3814047/ /pubmed/24222895 http://dx.doi.org/10.1155/2013/140237 Text en Copyright © 2013 Chuan-Ching Huang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Huang, Chuan-Ching Lin, Chun-Yuan Chang, Cheng-Wen Tang, Chuan Yi Enzyme Reaction Annotation Using Cloud Techniques |
title | Enzyme Reaction Annotation Using Cloud Techniques |
title_full | Enzyme Reaction Annotation Using Cloud Techniques |
title_fullStr | Enzyme Reaction Annotation Using Cloud Techniques |
title_full_unstemmed | Enzyme Reaction Annotation Using Cloud Techniques |
title_short | Enzyme Reaction Annotation Using Cloud Techniques |
title_sort | enzyme reaction annotation using cloud techniques |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814047/ https://www.ncbi.nlm.nih.gov/pubmed/24222895 http://dx.doi.org/10.1155/2013/140237 |
work_keys_str_mv | AT huangchuanching enzymereactionannotationusingcloudtechniques AT linchunyuan enzymereactionannotationusingcloudtechniques AT changchengwen enzymereactionannotationusingcloudtechniques AT tangchuanyi enzymereactionannotationusingcloudtechniques |