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Enzyme Reaction Annotation Using Cloud Techniques

An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reacti...

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Autores principales: Huang, Chuan-Ching, Lin, Chun-Yuan, Chang, Cheng-Wen, Tang, Chuan Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814047/
https://www.ncbi.nlm.nih.gov/pubmed/24222895
http://dx.doi.org/10.1155/2013/140237
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author Huang, Chuan-Ching
Lin, Chun-Yuan
Chang, Cheng-Wen
Tang, Chuan Yi
author_facet Huang, Chuan-Ching
Lin, Chun-Yuan
Chang, Cheng-Wen
Tang, Chuan Yi
author_sort Huang, Chuan-Ching
collection PubMed
description An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reaction annotation. Because accurate enzyme reaction annotation methods create potential for enhanced production capacity in these applications, they have received greater attention in the global market. We propose the enzyme reaction prediction (ERP) method as a novel tool to deduce enzyme reactions from domain architecture. We used several frequency relationships between architectures and reactions to enhance the annotation rates for single and multiple catalyzed reactions. The deluge of information which arose from high-throughput techniques in the postgenomic era has improved our understanding of biological data, although it presents obstacles in the data-processing stage. The high computational capacity provided by cloud computing has resulted in an exponential growth in the volume of incoming data. Cloud services also relieve the requirement for large-scale memory space required by this approach to analyze enzyme kinetic data. Our tool is designed as a single execution file; thus, it could be applied to any cloud platform in which multiple queries are supported.
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spelling pubmed-38140472013-11-11 Enzyme Reaction Annotation Using Cloud Techniques Huang, Chuan-Ching Lin, Chun-Yuan Chang, Cheng-Wen Tang, Chuan Yi Biomed Res Int Research Article An understanding of the activities of enzymes could help to elucidate the metabolic pathways of thousands of chemical reactions that are catalyzed by enzymes in living systems. Sophisticated applications such as drug design and metabolic reconstruction could be developed using accurate enzyme reaction annotation. Because accurate enzyme reaction annotation methods create potential for enhanced production capacity in these applications, they have received greater attention in the global market. We propose the enzyme reaction prediction (ERP) method as a novel tool to deduce enzyme reactions from domain architecture. We used several frequency relationships between architectures and reactions to enhance the annotation rates for single and multiple catalyzed reactions. The deluge of information which arose from high-throughput techniques in the postgenomic era has improved our understanding of biological data, although it presents obstacles in the data-processing stage. The high computational capacity provided by cloud computing has resulted in an exponential growth in the volume of incoming data. Cloud services also relieve the requirement for large-scale memory space required by this approach to analyze enzyme kinetic data. Our tool is designed as a single execution file; thus, it could be applied to any cloud platform in which multiple queries are supported. Hindawi Publishing Corporation 2013 2013-09-26 /pmc/articles/PMC3814047/ /pubmed/24222895 http://dx.doi.org/10.1155/2013/140237 Text en Copyright © 2013 Chuan-Ching Huang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Huang, Chuan-Ching
Lin, Chun-Yuan
Chang, Cheng-Wen
Tang, Chuan Yi
Enzyme Reaction Annotation Using Cloud Techniques
title Enzyme Reaction Annotation Using Cloud Techniques
title_full Enzyme Reaction Annotation Using Cloud Techniques
title_fullStr Enzyme Reaction Annotation Using Cloud Techniques
title_full_unstemmed Enzyme Reaction Annotation Using Cloud Techniques
title_short Enzyme Reaction Annotation Using Cloud Techniques
title_sort enzyme reaction annotation using cloud techniques
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814047/
https://www.ncbi.nlm.nih.gov/pubmed/24222895
http://dx.doi.org/10.1155/2013/140237
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