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Semantic Annotation of Mutable Data

Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in ea...

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Autores principales: Morris, Robert A., Dou, Lei, Hanken, James, Kelly, Maureen, Lowery, David B., Ludäscher, Bertram, Macklin, James A., Morris, Paul J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817185/
https://www.ncbi.nlm.nih.gov/pubmed/24223697
http://dx.doi.org/10.1371/journal.pone.0076093
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author Morris, Robert A.
Dou, Lei
Hanken, James
Kelly, Maureen
Lowery, David B.
Ludäscher, Bertram
Macklin, James A.
Morris, Paul J.
author_facet Morris, Robert A.
Dou, Lei
Hanken, James
Kelly, Maureen
Lowery, David B.
Ludäscher, Bertram
Macklin, James A.
Morris, Paul J.
author_sort Morris, Robert A.
collection PubMed
description Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in each case, an annotation needs to clearly identify its scope and its own terminology. However, electronic annotation of data differs from annotation of documents: the content of the annotations, including expectations and supporting evidence, is more often shared among members of networks. Any consequent actions taken by the holders of the annotated data could be shared as well. But even those current annotation systems that admit data as their subject often make it difficult or impossible to annotate at fine-enough granularity to use the results in this way for data quality control. We address these kinds of issues by offering simple extensions to an existing annotation ontology and describe how the results support an interest-based distribution of annotations. We are using the result to design and deploy a platform that supports annotation services overlaid on networks of distributed data, with particular application to data quality control. Our initial instance supports a set of natural science collection metadata services. An important application is the support for data quality control and provision of missing data. A previous proof of concept demonstrated such use based on data annotations modeled with XML-Schema.
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spelling pubmed-38171852013-11-09 Semantic Annotation of Mutable Data Morris, Robert A. Dou, Lei Hanken, James Kelly, Maureen Lowery, David B. Ludäscher, Bertram Macklin, James A. Morris, Paul J. PLoS One Research Article Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in each case, an annotation needs to clearly identify its scope and its own terminology. However, electronic annotation of data differs from annotation of documents: the content of the annotations, including expectations and supporting evidence, is more often shared among members of networks. Any consequent actions taken by the holders of the annotated data could be shared as well. But even those current annotation systems that admit data as their subject often make it difficult or impossible to annotate at fine-enough granularity to use the results in this way for data quality control. We address these kinds of issues by offering simple extensions to an existing annotation ontology and describe how the results support an interest-based distribution of annotations. We are using the result to design and deploy a platform that supports annotation services overlaid on networks of distributed data, with particular application to data quality control. Our initial instance supports a set of natural science collection metadata services. An important application is the support for data quality control and provision of missing data. A previous proof of concept demonstrated such use based on data annotations modeled with XML-Schema. Public Library of Science 2013-11-04 /pmc/articles/PMC3817185/ /pubmed/24223697 http://dx.doi.org/10.1371/journal.pone.0076093 Text en © 2013 Morris et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Morris, Robert A.
Dou, Lei
Hanken, James
Kelly, Maureen
Lowery, David B.
Ludäscher, Bertram
Macklin, James A.
Morris, Paul J.
Semantic Annotation of Mutable Data
title Semantic Annotation of Mutable Data
title_full Semantic Annotation of Mutable Data
title_fullStr Semantic Annotation of Mutable Data
title_full_unstemmed Semantic Annotation of Mutable Data
title_short Semantic Annotation of Mutable Data
title_sort semantic annotation of mutable data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817185/
https://www.ncbi.nlm.nih.gov/pubmed/24223697
http://dx.doi.org/10.1371/journal.pone.0076093
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