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Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations

Muller's ratchet is a paradigmatic model for the accumulation of deleterious mutations in a population of finite size. A click of the ratchet occurs when all individuals with the least number of deleterious mutations are lost irreversibly due to a stochastic fluctuation. In spite of the simplic...

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Autores principales: Metzger, Jakob J., Eule, Stephan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820511/
https://www.ncbi.nlm.nih.gov/pubmed/24244123
http://dx.doi.org/10.1371/journal.pcbi.1003303
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author Metzger, Jakob J.
Eule, Stephan
author_facet Metzger, Jakob J.
Eule, Stephan
author_sort Metzger, Jakob J.
collection PubMed
description Muller's ratchet is a paradigmatic model for the accumulation of deleterious mutations in a population of finite size. A click of the ratchet occurs when all individuals with the least number of deleterious mutations are lost irreversibly due to a stochastic fluctuation. In spite of the simplicity of the model, a quantitative understanding of the process remains an open challenge. In contrast to previous works, we here study a Moran model of the ratchet with overlapping generations. Employing an approximation which describes the fittest individuals as one class and the rest as a second class, we obtain closed analytical expressions of the ratchet rate in the rare clicking regime. As a click in this regime is caused by a rare, large fluctuation from a metastable state, we do not resort to a diffusion approximation but apply an approximation scheme which is especially well suited to describe extinction events from metastable states. This method also allows for a derivation of expressions for the quasi-stationary distribution of the fittest class. Additionally, we confirm numerically that the formulation with overlapping generations leads to the same results as the diffusion approximation and the corresponding Wright-Fisher model with non-overlapping generations.
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spelling pubmed-38205112013-11-15 Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations Metzger, Jakob J. Eule, Stephan PLoS Comput Biol Research Article Muller's ratchet is a paradigmatic model for the accumulation of deleterious mutations in a population of finite size. A click of the ratchet occurs when all individuals with the least number of deleterious mutations are lost irreversibly due to a stochastic fluctuation. In spite of the simplicity of the model, a quantitative understanding of the process remains an open challenge. In contrast to previous works, we here study a Moran model of the ratchet with overlapping generations. Employing an approximation which describes the fittest individuals as one class and the rest as a second class, we obtain closed analytical expressions of the ratchet rate in the rare clicking regime. As a click in this regime is caused by a rare, large fluctuation from a metastable state, we do not resort to a diffusion approximation but apply an approximation scheme which is especially well suited to describe extinction events from metastable states. This method also allows for a derivation of expressions for the quasi-stationary distribution of the fittest class. Additionally, we confirm numerically that the formulation with overlapping generations leads to the same results as the diffusion approximation and the corresponding Wright-Fisher model with non-overlapping generations. Public Library of Science 2013-11-07 /pmc/articles/PMC3820511/ /pubmed/24244123 http://dx.doi.org/10.1371/journal.pcbi.1003303 Text en © 2013 Metzger, Eule http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Metzger, Jakob J.
Eule, Stephan
Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title_full Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title_fullStr Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title_full_unstemmed Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title_short Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations
title_sort distribution of the fittest individuals and the rate of muller's ratchet in a model with overlapping generations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820511/
https://www.ncbi.nlm.nih.gov/pubmed/24244123
http://dx.doi.org/10.1371/journal.pcbi.1003303
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