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Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data

We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution...

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Detalles Bibliográficos
Autores principales: Olsson, Simon, Frellsen, Jes, Boomsma, Wouter, Mardia, Kanti V., Hamelryck, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820694/
https://www.ncbi.nlm.nih.gov/pubmed/24244505
http://dx.doi.org/10.1371/journal.pone.0079439
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author Olsson, Simon
Frellsen, Jes
Boomsma, Wouter
Mardia, Kanti V.
Hamelryck, Thomas
author_facet Olsson, Simon
Frellsen, Jes
Boomsma, Wouter
Mardia, Kanti V.
Hamelryck, Thomas
author_sort Olsson, Simon
collection PubMed
description We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution [Image: see text] with respect to the experimental data and its uncertainty. This principle generalizes the successful inferential structure determination method and recently proposed maximum entropy methods. Tractability of the protocol is demonstrated through the analysis of simulated nuclear magnetic resonance spectroscopy data of a small peptide.
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spelling pubmed-38206942013-11-15 Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data Olsson, Simon Frellsen, Jes Boomsma, Wouter Mardia, Kanti V. Hamelryck, Thomas PLoS One Research Article We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution [Image: see text] with respect to the experimental data and its uncertainty. This principle generalizes the successful inferential structure determination method and recently proposed maximum entropy methods. Tractability of the protocol is demonstrated through the analysis of simulated nuclear magnetic resonance spectroscopy data of a small peptide. Public Library of Science 2013-11-07 /pmc/articles/PMC3820694/ /pubmed/24244505 http://dx.doi.org/10.1371/journal.pone.0079439 Text en © 2013 Olsson et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Olsson, Simon
Frellsen, Jes
Boomsma, Wouter
Mardia, Kanti V.
Hamelryck, Thomas
Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title_full Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title_fullStr Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title_full_unstemmed Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title_short Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
title_sort inference of structure ensembles of flexible biomolecules from sparse, averaged data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820694/
https://www.ncbi.nlm.nih.gov/pubmed/24244505
http://dx.doi.org/10.1371/journal.pone.0079439
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