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Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data
We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820694/ https://www.ncbi.nlm.nih.gov/pubmed/24244505 http://dx.doi.org/10.1371/journal.pone.0079439 |
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author | Olsson, Simon Frellsen, Jes Boomsma, Wouter Mardia, Kanti V. Hamelryck, Thomas |
author_facet | Olsson, Simon Frellsen, Jes Boomsma, Wouter Mardia, Kanti V. Hamelryck, Thomas |
author_sort | Olsson, Simon |
collection | PubMed |
description | We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution [Image: see text] with respect to the experimental data and its uncertainty. This principle generalizes the successful inferential structure determination method and recently proposed maximum entropy methods. Tractability of the protocol is demonstrated through the analysis of simulated nuclear magnetic resonance spectroscopy data of a small peptide. |
format | Online Article Text |
id | pubmed-3820694 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-38206942013-11-15 Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data Olsson, Simon Frellsen, Jes Boomsma, Wouter Mardia, Kanti V. Hamelryck, Thomas PLoS One Research Article We present the theoretical foundations of a general principle to infer structure ensembles of flexible biomolecules from spatially and temporally averaged data obtained in biophysical experiments. The central idea is to compute the Kullback-Leibler optimal modification of a given prior distribution [Image: see text] with respect to the experimental data and its uncertainty. This principle generalizes the successful inferential structure determination method and recently proposed maximum entropy methods. Tractability of the protocol is demonstrated through the analysis of simulated nuclear magnetic resonance spectroscopy data of a small peptide. Public Library of Science 2013-11-07 /pmc/articles/PMC3820694/ /pubmed/24244505 http://dx.doi.org/10.1371/journal.pone.0079439 Text en © 2013 Olsson et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Olsson, Simon Frellsen, Jes Boomsma, Wouter Mardia, Kanti V. Hamelryck, Thomas Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title | Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title_full | Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title_fullStr | Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title_full_unstemmed | Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title_short | Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data |
title_sort | inference of structure ensembles of flexible biomolecules from sparse, averaged data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820694/ https://www.ncbi.nlm.nih.gov/pubmed/24244505 http://dx.doi.org/10.1371/journal.pone.0079439 |
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