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A DNA-based method for studying root responses to drought in field-grown wheat genotypes
Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824167/ https://www.ncbi.nlm.nih.gov/pubmed/24217242 http://dx.doi.org/10.1038/srep03194 |
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author | Huang, Chun Y. Kuchel, Haydn Edwards, James Hall, Sharla Parent, Boris Eckermann, Paul Herdina Hartley, Diana M. Langridge, Peter McKay, Alan C. |
author_facet | Huang, Chun Y. Kuchel, Haydn Edwards, James Hall, Sharla Parent, Boris Eckermann, Paul Herdina Hartley, Diana M. Langridge, Peter McKay, Alan C. |
author_sort | Huang, Chun Y. |
collection | PubMed |
description | Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA concentration in soil and detects root responses to drought in controlled environment and field trials. To allow comparison of soil DNA concentrations from different wheat genotypes, we also developed a procedure for correcting genotypic differences in the copy number of the target DNA sequence. The new method eliminates the need for separation of roots from soil and permits large-scale phenotyping of root responses to drought or other environmental and disease stresses in the field. |
format | Online Article Text |
id | pubmed-3824167 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-38241672013-11-12 A DNA-based method for studying root responses to drought in field-grown wheat genotypes Huang, Chun Y. Kuchel, Haydn Edwards, James Hall, Sharla Parent, Boris Eckermann, Paul Herdina Hartley, Diana M. Langridge, Peter McKay, Alan C. Sci Rep Article Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA concentration in soil and detects root responses to drought in controlled environment and field trials. To allow comparison of soil DNA concentrations from different wheat genotypes, we also developed a procedure for correcting genotypic differences in the copy number of the target DNA sequence. The new method eliminates the need for separation of roots from soil and permits large-scale phenotyping of root responses to drought or other environmental and disease stresses in the field. Nature Publishing Group 2013-11-12 /pmc/articles/PMC3824167/ /pubmed/24217242 http://dx.doi.org/10.1038/srep03194 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Article Huang, Chun Y. Kuchel, Haydn Edwards, James Hall, Sharla Parent, Boris Eckermann, Paul Herdina Hartley, Diana M. Langridge, Peter McKay, Alan C. A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title | A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title_full | A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title_fullStr | A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title_full_unstemmed | A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title_short | A DNA-based method for studying root responses to drought in field-grown wheat genotypes |
title_sort | dna-based method for studying root responses to drought in field-grown wheat genotypes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824167/ https://www.ncbi.nlm.nih.gov/pubmed/24217242 http://dx.doi.org/10.1038/srep03194 |
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