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A DNA-based method for studying root responses to drought in field-grown wheat genotypes

Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA...

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Autores principales: Huang, Chun Y., Kuchel, Haydn, Edwards, James, Hall, Sharla, Parent, Boris, Eckermann, Paul, Herdina, Hartley, Diana M., Langridge, Peter, McKay, Alan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824167/
https://www.ncbi.nlm.nih.gov/pubmed/24217242
http://dx.doi.org/10.1038/srep03194
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author Huang, Chun Y.
Kuchel, Haydn
Edwards, James
Hall, Sharla
Parent, Boris
Eckermann, Paul
Herdina
Hartley, Diana M.
Langridge, Peter
McKay, Alan C.
author_facet Huang, Chun Y.
Kuchel, Haydn
Edwards, James
Hall, Sharla
Parent, Boris
Eckermann, Paul
Herdina
Hartley, Diana M.
Langridge, Peter
McKay, Alan C.
author_sort Huang, Chun Y.
collection PubMed
description Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA concentration in soil and detects root responses to drought in controlled environment and field trials. To allow comparison of soil DNA concentrations from different wheat genotypes, we also developed a procedure for correcting genotypic differences in the copy number of the target DNA sequence. The new method eliminates the need for separation of roots from soil and permits large-scale phenotyping of root responses to drought or other environmental and disease stresses in the field.
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spelling pubmed-38241672013-11-12 A DNA-based method for studying root responses to drought in field-grown wheat genotypes Huang, Chun Y. Kuchel, Haydn Edwards, James Hall, Sharla Parent, Boris Eckermann, Paul Herdina Hartley, Diana M. Langridge, Peter McKay, Alan C. Sci Rep Article Root systems are critical for water and nutrient acquisition by crops. Current methods measuring root biomass and length are slow and labour-intensive for studying root responses to environmental stresses in the field. Here, we report the development of a method that measures changes in the root DNA concentration in soil and detects root responses to drought in controlled environment and field trials. To allow comparison of soil DNA concentrations from different wheat genotypes, we also developed a procedure for correcting genotypic differences in the copy number of the target DNA sequence. The new method eliminates the need for separation of roots from soil and permits large-scale phenotyping of root responses to drought or other environmental and disease stresses in the field. Nature Publishing Group 2013-11-12 /pmc/articles/PMC3824167/ /pubmed/24217242 http://dx.doi.org/10.1038/srep03194 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Article
Huang, Chun Y.
Kuchel, Haydn
Edwards, James
Hall, Sharla
Parent, Boris
Eckermann, Paul
Herdina
Hartley, Diana M.
Langridge, Peter
McKay, Alan C.
A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title_full A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title_fullStr A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title_full_unstemmed A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title_short A DNA-based method for studying root responses to drought in field-grown wheat genotypes
title_sort dna-based method for studying root responses to drought in field-grown wheat genotypes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824167/
https://www.ncbi.nlm.nih.gov/pubmed/24217242
http://dx.doi.org/10.1038/srep03194
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