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Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods

The goal of this work is to introduce new metrics to assess risk of Alzheimer's disease (AD) which we call AD Pattern Similarity (AD-PS) scores. These metrics are the conditional probabilities modeled by large-scale regularized logistic regression. The AD-PS scores derived from structural MRI a...

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Autores principales: Casanova, Ramon, Hsu, Fang-Chi, Sink, Kaycee M., Rapp, Stephen R., Williamson, Jeff D., Resnick, Susan M., Espeland, Mark A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3826736/
https://www.ncbi.nlm.nih.gov/pubmed/24250789
http://dx.doi.org/10.1371/journal.pone.0077949
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author Casanova, Ramon
Hsu, Fang-Chi
Sink, Kaycee M.
Rapp, Stephen R.
Williamson, Jeff D.
Resnick, Susan M.
Espeland, Mark A.
author_facet Casanova, Ramon
Hsu, Fang-Chi
Sink, Kaycee M.
Rapp, Stephen R.
Williamson, Jeff D.
Resnick, Susan M.
Espeland, Mark A.
author_sort Casanova, Ramon
collection PubMed
description The goal of this work is to introduce new metrics to assess risk of Alzheimer's disease (AD) which we call AD Pattern Similarity (AD-PS) scores. These metrics are the conditional probabilities modeled by large-scale regularized logistic regression. The AD-PS scores derived from structural MRI and cognitive test data were tested across different situations using data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) study. The scores were computed across groups of participants stratified by cognitive status, age and functional status. Cox proportional hazards regression was used to evaluate associations with the distribution of conversion times from mild cognitive impairment to AD. The performances of classifiers developed using data from different types of brain tissue were systematically characterized across cognitive status groups. We also explored the performance of anatomical and cognitive-anatomical composite scores generated by combining the outputs of classifiers developed using different types of data. In addition, we provide the AD-PS scores performance relative to other metrics used in the field including the Spatial Pattern of Abnormalities for Recognition of Early AD (SPARE-AD) index and total hippocampal volume for the variables examined.
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spelling pubmed-38267362013-11-18 Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods Casanova, Ramon Hsu, Fang-Chi Sink, Kaycee M. Rapp, Stephen R. Williamson, Jeff D. Resnick, Susan M. Espeland, Mark A. PLoS One Research Article The goal of this work is to introduce new metrics to assess risk of Alzheimer's disease (AD) which we call AD Pattern Similarity (AD-PS) scores. These metrics are the conditional probabilities modeled by large-scale regularized logistic regression. The AD-PS scores derived from structural MRI and cognitive test data were tested across different situations using data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) study. The scores were computed across groups of participants stratified by cognitive status, age and functional status. Cox proportional hazards regression was used to evaluate associations with the distribution of conversion times from mild cognitive impairment to AD. The performances of classifiers developed using data from different types of brain tissue were systematically characterized across cognitive status groups. We also explored the performance of anatomical and cognitive-anatomical composite scores generated by combining the outputs of classifiers developed using different types of data. In addition, we provide the AD-PS scores performance relative to other metrics used in the field including the Spatial Pattern of Abnormalities for Recognition of Early AD (SPARE-AD) index and total hippocampal volume for the variables examined. Public Library of Science 2013-11-08 /pmc/articles/PMC3826736/ /pubmed/24250789 http://dx.doi.org/10.1371/journal.pone.0077949 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
Casanova, Ramon
Hsu, Fang-Chi
Sink, Kaycee M.
Rapp, Stephen R.
Williamson, Jeff D.
Resnick, Susan M.
Espeland, Mark A.
Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title_full Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title_fullStr Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title_full_unstemmed Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title_short Alzheimer's Disease Risk Assessment Using Large-Scale Machine Learning Methods
title_sort alzheimer's disease risk assessment using large-scale machine learning methods
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3826736/
https://www.ncbi.nlm.nih.gov/pubmed/24250789
http://dx.doi.org/10.1371/journal.pone.0077949
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