A simulator for spatially extended kappa models

Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions. Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http:...

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Detalles Bibliográficos
Autores principales: Sorokina, Oksana, Sorokin, Anatoly, Douglas Armstrong, J., Danos, Vincent
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834793/
https://www.ncbi.nlm.nih.gov/pubmed/24021382
http://dx.doi.org/10.1093/bioinformatics/btt523
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author Sorokina, Oksana
Sorokin, Anatoly
Douglas Armstrong, J.
Danos, Vincent
author_facet Sorokina, Oksana
Sorokin, Anatoly
Douglas Armstrong, J.
Danos, Vincent
author_sort Sorokina, Oksana
collection PubMed
description Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions. Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http://github.com/lptolik/SpatialKappa. Contact: oksana.sorokina@ed.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-38347932013-11-21 A simulator for spatially extended kappa models Sorokina, Oksana Sorokin, Anatoly Douglas Armstrong, J. Danos, Vincent Bioinformatics Applications Notes Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions. Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http://github.com/lptolik/SpatialKappa. Contact: oksana.sorokina@ed.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2013-12-01 2013-09-09 /pmc/articles/PMC3834793/ /pubmed/24021382 http://dx.doi.org/10.1093/bioinformatics/btt523 Text en © The Author 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Sorokina, Oksana
Sorokin, Anatoly
Douglas Armstrong, J.
Danos, Vincent
A simulator for spatially extended kappa models
title A simulator for spatially extended kappa models
title_full A simulator for spatially extended kappa models
title_fullStr A simulator for spatially extended kappa models
title_full_unstemmed A simulator for spatially extended kappa models
title_short A simulator for spatially extended kappa models
title_sort simulator for spatially extended kappa models
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834793/
https://www.ncbi.nlm.nih.gov/pubmed/24021382
http://dx.doi.org/10.1093/bioinformatics/btt523
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