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Performance of Polygenic Scores for Predicting Phobic Anxiety

CONTEXT: Anxiety disorders are common, with a lifetime prevalence of 20% in the U.S., and are responsible for substantial burdens of disability, missed work days and health care utilization. To date, no causal genetic variants have been identified for anxiety, anxiety disorders, or related traits. O...

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Autores principales: Walter, Stefan, Glymour, M. Maria, Koenen, Karestan, Liang, Liming, Tchetgen Tchetgen, Eric J., Cornelis, Marilyn, Chang, Shun-Chiao, Rimm, Eric, Kawachi, Ichiro, Kubzansky, Laura D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3835914/
https://www.ncbi.nlm.nih.gov/pubmed/24278274
http://dx.doi.org/10.1371/journal.pone.0080326
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author Walter, Stefan
Glymour, M. Maria
Koenen, Karestan
Liang, Liming
Tchetgen Tchetgen, Eric J.
Cornelis, Marilyn
Chang, Shun-Chiao
Rimm, Eric
Kawachi, Ichiro
Kubzansky, Laura D.
author_facet Walter, Stefan
Glymour, M. Maria
Koenen, Karestan
Liang, Liming
Tchetgen Tchetgen, Eric J.
Cornelis, Marilyn
Chang, Shun-Chiao
Rimm, Eric
Kawachi, Ichiro
Kubzansky, Laura D.
author_sort Walter, Stefan
collection PubMed
description CONTEXT: Anxiety disorders are common, with a lifetime prevalence of 20% in the U.S., and are responsible for substantial burdens of disability, missed work days and health care utilization. To date, no causal genetic variants have been identified for anxiety, anxiety disorders, or related traits. OBJECTIVE: To investigate whether a phobic anxiety symptom score was associated with 3 alternative polygenic risk scores, derived from external genome-wide association studies of anxiety, an internally estimated agnostic polygenic score, or previously identified candidate genes. DESIGN: Longitudinal follow-up study. Using linear and logistic regression we investigated whether phobic anxiety was associated with polygenic risk scores derived from internal, leave-one out genome-wide association studies, from 31 candidate genes, and from out-of-sample genome-wide association weights previously shown to predict depression and anxiety in another cohort. SETTING AND PARTICIPANTS: Study participants (n = 11,127) were individuals from the Nurses' Health Study and Health Professionals Follow-up Study. MAIN OUTCOME MEASURE: Anxiety symptoms were assessed via the 8-item phobic anxiety scale of the Crown Crisp Index at two time points, from which a continuous phenotype score was derived. RESULTS: We found no genome-wide significant associations with phobic anxiety. Phobic anxiety was also not associated with a polygenic risk score derived from the genome-wide association study beta weights using liberal p-value thresholds; with a previously published genome-wide polygenic score; or with a candidate gene risk score based on 31 genes previously hypothesized to predict anxiety. CONCLUSION: There is a substantial gap between twin-study heritability estimates of anxiety disorders ranging between 20–40% and heritability explained by genome-wide association results. New approaches such as improved genome imputations, application of gene expression and biological pathways information, and incorporating social or environmental modifiers of genetic risks may be necessary to identify significant genetic predictors of anxiety.
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spelling pubmed-38359142013-11-25 Performance of Polygenic Scores for Predicting Phobic Anxiety Walter, Stefan Glymour, M. Maria Koenen, Karestan Liang, Liming Tchetgen Tchetgen, Eric J. Cornelis, Marilyn Chang, Shun-Chiao Rimm, Eric Kawachi, Ichiro Kubzansky, Laura D. PLoS One Research Article CONTEXT: Anxiety disorders are common, with a lifetime prevalence of 20% in the U.S., and are responsible for substantial burdens of disability, missed work days and health care utilization. To date, no causal genetic variants have been identified for anxiety, anxiety disorders, or related traits. OBJECTIVE: To investigate whether a phobic anxiety symptom score was associated with 3 alternative polygenic risk scores, derived from external genome-wide association studies of anxiety, an internally estimated agnostic polygenic score, or previously identified candidate genes. DESIGN: Longitudinal follow-up study. Using linear and logistic regression we investigated whether phobic anxiety was associated with polygenic risk scores derived from internal, leave-one out genome-wide association studies, from 31 candidate genes, and from out-of-sample genome-wide association weights previously shown to predict depression and anxiety in another cohort. SETTING AND PARTICIPANTS: Study participants (n = 11,127) were individuals from the Nurses' Health Study and Health Professionals Follow-up Study. MAIN OUTCOME MEASURE: Anxiety symptoms were assessed via the 8-item phobic anxiety scale of the Crown Crisp Index at two time points, from which a continuous phenotype score was derived. RESULTS: We found no genome-wide significant associations with phobic anxiety. Phobic anxiety was also not associated with a polygenic risk score derived from the genome-wide association study beta weights using liberal p-value thresholds; with a previously published genome-wide polygenic score; or with a candidate gene risk score based on 31 genes previously hypothesized to predict anxiety. CONCLUSION: There is a substantial gap between twin-study heritability estimates of anxiety disorders ranging between 20–40% and heritability explained by genome-wide association results. New approaches such as improved genome imputations, application of gene expression and biological pathways information, and incorporating social or environmental modifiers of genetic risks may be necessary to identify significant genetic predictors of anxiety. Public Library of Science 2013-11-20 /pmc/articles/PMC3835914/ /pubmed/24278274 http://dx.doi.org/10.1371/journal.pone.0080326 Text en © 2013 Walter et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Walter, Stefan
Glymour, M. Maria
Koenen, Karestan
Liang, Liming
Tchetgen Tchetgen, Eric J.
Cornelis, Marilyn
Chang, Shun-Chiao
Rimm, Eric
Kawachi, Ichiro
Kubzansky, Laura D.
Performance of Polygenic Scores for Predicting Phobic Anxiety
title Performance of Polygenic Scores for Predicting Phobic Anxiety
title_full Performance of Polygenic Scores for Predicting Phobic Anxiety
title_fullStr Performance of Polygenic Scores for Predicting Phobic Anxiety
title_full_unstemmed Performance of Polygenic Scores for Predicting Phobic Anxiety
title_short Performance of Polygenic Scores for Predicting Phobic Anxiety
title_sort performance of polygenic scores for predicting phobic anxiety
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3835914/
https://www.ncbi.nlm.nih.gov/pubmed/24278274
http://dx.doi.org/10.1371/journal.pone.0080326
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