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Students’ perspective on genomics: from sample to sequence using the case study of blueberry

Advances in genomic sequencing technologies in the past decade have revolutionized the field of genomics, resulting in faster and less expensive sequencing. Holding back the potential for innovation, however, is a widespread lack of understanding of genomics and sequencing by the general public. In...

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Autores principales: Mudd, Austin B., White, Elizabeth J., Bolloskis, Michael P., Kapur, Nicholas P., Everhart, Koyt W., Lin, Ying-Chen, Bussler, Weston W., Reid, Robert W., Brown, Ryan H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3841016/
https://www.ncbi.nlm.nih.gov/pubmed/24324481
http://dx.doi.org/10.3389/fgene.2013.00245
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author Mudd, Austin B.
White, Elizabeth J.
Bolloskis, Michael P.
Kapur, Nicholas P.
Everhart, Koyt W.
Lin, Ying-Chen
Bussler, Weston W.
Reid, Robert W.
Brown, Ryan H.
author_facet Mudd, Austin B.
White, Elizabeth J.
Bolloskis, Michael P.
Kapur, Nicholas P.
Everhart, Koyt W.
Lin, Ying-Chen
Bussler, Weston W.
Reid, Robert W.
Brown, Ryan H.
author_sort Mudd, Austin B.
collection PubMed
description Advances in genomic sequencing technologies in the past decade have revolutionized the field of genomics, resulting in faster and less expensive sequencing. Holding back the potential for innovation, however, is a widespread lack of understanding of genomics and sequencing by the general public. In an attempt to remedy this problem, this paper presents an introduction to the fields of genomics, bioinformatics, and proteomics using the blueberry genome as a model case study of the plant genomics field. The blueberry (Vaccinium sect. Cyanococcus) is often cited as a “super food” in the media due to its nutritional benefits and global economic importance. There have been a number of related genomic publications in the past 20 years; however, a completed genome and a full analysis into the health-related pathways are still needed. As exemplified by this blueberry case study, there are opportunities for future genomic research into numerous beneficial plant species. The solid background presented in this paper provides future researchers the foundation to explore these uncharted areas.
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spelling pubmed-38410162013-12-09 Students’ perspective on genomics: from sample to sequence using the case study of blueberry Mudd, Austin B. White, Elizabeth J. Bolloskis, Michael P. Kapur, Nicholas P. Everhart, Koyt W. Lin, Ying-Chen Bussler, Weston W. Reid, Robert W. Brown, Ryan H. Front Genet Plant Science Advances in genomic sequencing technologies in the past decade have revolutionized the field of genomics, resulting in faster and less expensive sequencing. Holding back the potential for innovation, however, is a widespread lack of understanding of genomics and sequencing by the general public. In an attempt to remedy this problem, this paper presents an introduction to the fields of genomics, bioinformatics, and proteomics using the blueberry genome as a model case study of the plant genomics field. The blueberry (Vaccinium sect. Cyanococcus) is often cited as a “super food” in the media due to its nutritional benefits and global economic importance. There have been a number of related genomic publications in the past 20 years; however, a completed genome and a full analysis into the health-related pathways are still needed. As exemplified by this blueberry case study, there are opportunities for future genomic research into numerous beneficial plant species. The solid background presented in this paper provides future researchers the foundation to explore these uncharted areas. Frontiers Media S.A. 2013-11-26 /pmc/articles/PMC3841016/ /pubmed/24324481 http://dx.doi.org/10.3389/fgene.2013.00245 Text en Copyright © 2013 Mudd, White, Bolloskis, Kapur, Everhart, Lin, Bussler, Reid and Brown. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Mudd, Austin B.
White, Elizabeth J.
Bolloskis, Michael P.
Kapur, Nicholas P.
Everhart, Koyt W.
Lin, Ying-Chen
Bussler, Weston W.
Reid, Robert W.
Brown, Ryan H.
Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title_full Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title_fullStr Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title_full_unstemmed Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title_short Students’ perspective on genomics: from sample to sequence using the case study of blueberry
title_sort students’ perspective on genomics: from sample to sequence using the case study of blueberry
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3841016/
https://www.ncbi.nlm.nih.gov/pubmed/24324481
http://dx.doi.org/10.3389/fgene.2013.00245
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