Cargando…

An R package for SNP marker-based parent-offspring tests

BACKGROUND: With the advancement of genotyping technologies, whole genome and high-density SNP markers have been widely used for genotyping of mapping populations and for characterization of germplasm lines in many crops. Before conducting SNP data analysis, it is necessary to check the individuals...

Descripción completa

Detalles Bibliográficos
Autores principales:	Abdel-Haleem, Hussein, Ji, Pengsheng, Boerma, H Roger, Li, Zenglu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842643/ https://www.ncbi.nlm.nih.gov/pubmed/24245988 http://dx.doi.org/10.1186/1746-4811-9-44

Ejemplares similares

skater: an R package for SNP-based kinship analysis, testing, and evaluation
por: Turner, Stephen D., et al.
Publicado: (2022)

‘apparent’: a simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding information
por: Melo, Arthur T. O., et al.
Publicado: (2019)

MPAgenomics: an R package for multi-patient analysis of genomic markers
por: Grimonprez, Quentin, et al.
Publicado: (2014)

wtest: an integrated R package for genetic epistasis testing
por: Sun, Rui, et al.
Publicado: (2019)

INFLECT: an R-package for cytometry cluster evaluation using marker modality
por: Verhoeff, Jan, et al.
Publicado: (2022)

stuart: an R package for the curation of SNP genotypes from experimental crosses
por: Bourdon, Marie, et al.
Publicado: (2022)

AFLPsim: an R package to simulate and detect dominant markers under selection in hybridizing populations
por: Balao, Francisco, et al.
Publicado: (2014)

Filtering de novo indels in parent-offspring trios
por: Liu, Yongzhuang, et al.
Publicado: (2020)

NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing
por: Johansson, Lennart F., et al.
Publicado: (2018)

affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling
por: Hernandez-Ferrer, Carles, et al.
Publicado: (2015)

Hierarchicell: an R-package for estimating power for tests of differential expression with single-cell data
por: Zimmerman, Kip D., et al.
Publicado: (2021)

rCUR: an R package for CUR matrix decomposition
por: Bodor, András, et al.
Publicado: (2012)

perfectphyloR: An R package for reconstructing perfect phylogenies
por: Karunarathna, Charith B., et al.
Publicado: (2019)

Fragman: an R package for fragment analysis
por: Covarrubias-Pazaran, Giovanny, et al.
Publicado: (2016)

DHOEM: a statistical simulation software for simulating new markers in real SNP marker data
por: Jacquin, Laval, et al.
Publicado: (2015)

covidscreen: a web app and R Package for assessing asymptomatic COVID-19 testing strategies
por: Smith, Jesse, et al.
Publicado: (2022)

csdR, an R package for differential co-expression analysis
por: Pettersen, Jakob P., et al.
Publicado: (2022)

An R package for analyzing and modeling ranking data
por: Lee, Paul H, et al.
Publicado: (2013)

dna: An R package for differential network analysis
por: Gill, Ryan, et al.
Publicado: (2014)

GENLIB: an R package for the analysis of genealogical data
por: Gauvin, Héloïse, et al.
Publicado: (2015)

micropan: an R-package for microbial pan-genomics
por: Snipen, Lars, et al.
Publicado: (2015)

Visualizing tumor evolution with the fishplot package for R
por: Miller, Christopher A., et al.
Publicado: (2016)

FELLA: an R package to enrich metabolomics data
por: Picart-Armada, Sergio, et al.
Publicado: (2018)

stpm: an R package for stochastic process model
por: Zhbannikov, Ilya Y., et al.
Publicado: (2017)

microclass: an R-package for 16S taxonomy classification
por: Liland, Kristian Hovde, et al.
Publicado: (2017)

PANEV: an R package for a pathway-based network visualization
por: Palombo, Valentino, et al.
Publicado: (2020)

SNP-VISTA: An interactive SNP visualization tool
por: Shah, Nameeta, et al.
Publicado: (2005)

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
por: Joo, Taewoon, et al.
Publicado: (2019)

RevEcoR: an R package for the reverse ecology analysis of microbiomes
por: Cao, Yang, et al.
Publicado: (2016)

geneHapR: an R package for gene haplotypic statistics and visualization
por: Zhang, Renliang, et al.
Publicado: (2023)

estimateR: an R package to estimate and monitor the effective reproductive number
por: Scire, Jérémie, et al.
Publicado: (2023)

SNP-PHAGE – High throughput SNP discovery pipeline
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

DOSim: An R package for similarity between diseases based on Disease Ontology
por: Li, Jiang, et al.
Publicado: (2011)

flippant–An R package for the automated analysis of fluorescence-based scramblase assays
por: Cotton, Richard J., et al.
Publicado: (2017)

AMDA: an R package for the automated microarray data analysis
por: Pelizzola, Mattia, et al.
Publicado: (2006)

WGCNA: an R package for weighted correlation network analysis
por: Langfelder, Peter, et al.
Publicado: (2008)

RankAggreg, an R package for weighted rank aggregation
por: Pihur, Vasyl, et al.
Publicado: (2009)

A flexible R package for nonnegative matrix factorization
por: Gaujoux, Renaud, et al.
Publicado: (2010)

GSAR: Bioconductor package for Gene Set analysis in R
por: Rahmatallah, Yasir, et al.
Publicado: (2017)

ggroups: an R package for pedigree and genetic groups data
por: Nilforooshan, Mohammad Ali, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_e0nospcuignj3kvka18h7bhumh