Cargando…

In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE

We have examined the reactivation mechanism of the tabun-conjugated AChE with various drugs using density functional theory (DFT) and post-Hartree-Fock methods. The electronic environments and structural features of neutral oximes (deazapralidoxime and 3-hydroxy-2-pyridinealdoxime) and charged monop...

Descripción completa

Detalles Bibliográficos
Autores principales: Lo, Rabindranath, Chandar, Nellore Bhanu, Kesharwani, Manoj K., Jain, Aastha, Ganguly, Bishwajit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3846473/
https://www.ncbi.nlm.nih.gov/pubmed/24312449
http://dx.doi.org/10.1371/journal.pone.0079591
_version_ 1782293433101058048
author Lo, Rabindranath
Chandar, Nellore Bhanu
Kesharwani, Manoj K.
Jain, Aastha
Ganguly, Bishwajit
author_facet Lo, Rabindranath
Chandar, Nellore Bhanu
Kesharwani, Manoj K.
Jain, Aastha
Ganguly, Bishwajit
author_sort Lo, Rabindranath
collection PubMed
description We have examined the reactivation mechanism of the tabun-conjugated AChE with various drugs using density functional theory (DFT) and post-Hartree-Fock methods. The electronic environments and structural features of neutral oximes (deazapralidoxime and 3-hydroxy-2-pyridinealdoxime) and charged monopyridinium oxime (2-PAM) and bispyridinium oxime (Ortho-7) are different, hence their efficacy varies towards the reactivation process of tabun-conjugated AChE. The calculated potential energy surfaces suggest that a monopyridinium reactivator is less favorable for the reactivation of tabun-inhibited AChE compared to a bis-quaternary reactivator, which substantiates the experimental study. The rate determining barrier with neutral oximes was found to be ∼2.5 kcal/mol, which was ∼5.0 kcal/mol lower than charged oxime drugs such as Ortho-7. The structural analysis of the calculated geometries suggest that the charged oximes form strong O(…)H and N(…)H hydrogen bonding and C-H(…)π non-bonding interaction with the tabun-inhibited enzyme to stabilize the reactant complex compared to separated reactants, which influences the activation barrier. The ability of neutral drugs to cross the blood-brain barrier was also found to be superior to charged antidotes, which corroborates the available experimental observations. The calculated activation barriers support the superiority of neutral oximes for the activation of tabun-inhibited AChE compared to charged oximes. However, they lack effective interactions with their peripheral sites. Docking studies revealed that the poor binding affinity of simple neutral oxime drugs such as 3-hydroxy-2-pyridinealdoxime inside the active-site gorge of AChE was significantly augmented with the addition of neutral peripheral units compared to conventional charged peripheral sites. The newly designed oxime drug 2 appears to be an attractive candidate as efficient antidote to kinetically and structurally reactivate the tabun-inhibited enzyme.
format Online
Article
Text
id pubmed-3846473
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-38464732013-12-05 In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE Lo, Rabindranath Chandar, Nellore Bhanu Kesharwani, Manoj K. Jain, Aastha Ganguly, Bishwajit PLoS One Research Article We have examined the reactivation mechanism of the tabun-conjugated AChE with various drugs using density functional theory (DFT) and post-Hartree-Fock methods. The electronic environments and structural features of neutral oximes (deazapralidoxime and 3-hydroxy-2-pyridinealdoxime) and charged monopyridinium oxime (2-PAM) and bispyridinium oxime (Ortho-7) are different, hence their efficacy varies towards the reactivation process of tabun-conjugated AChE. The calculated potential energy surfaces suggest that a monopyridinium reactivator is less favorable for the reactivation of tabun-inhibited AChE compared to a bis-quaternary reactivator, which substantiates the experimental study. The rate determining barrier with neutral oximes was found to be ∼2.5 kcal/mol, which was ∼5.0 kcal/mol lower than charged oxime drugs such as Ortho-7. The structural analysis of the calculated geometries suggest that the charged oximes form strong O(…)H and N(…)H hydrogen bonding and C-H(…)π non-bonding interaction with the tabun-inhibited enzyme to stabilize the reactant complex compared to separated reactants, which influences the activation barrier. The ability of neutral drugs to cross the blood-brain barrier was also found to be superior to charged antidotes, which corroborates the available experimental observations. The calculated activation barriers support the superiority of neutral oximes for the activation of tabun-inhibited AChE compared to charged oximes. However, they lack effective interactions with their peripheral sites. Docking studies revealed that the poor binding affinity of simple neutral oxime drugs such as 3-hydroxy-2-pyridinealdoxime inside the active-site gorge of AChE was significantly augmented with the addition of neutral peripheral units compared to conventional charged peripheral sites. The newly designed oxime drug 2 appears to be an attractive candidate as efficient antidote to kinetically and structurally reactivate the tabun-inhibited enzyme. Public Library of Science 2013-12-02 /pmc/articles/PMC3846473/ /pubmed/24312449 http://dx.doi.org/10.1371/journal.pone.0079591 Text en © 2013 Lo et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Lo, Rabindranath
Chandar, Nellore Bhanu
Kesharwani, Manoj K.
Jain, Aastha
Ganguly, Bishwajit
In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title_full In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title_fullStr In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title_full_unstemmed In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title_short In Silico Studies in Probing the Role of Kinetic and Structural Effects of Different Drugs for the Reactivation of Tabun-Inhibited AChE
title_sort in silico studies in probing the role of kinetic and structural effects of different drugs for the reactivation of tabun-inhibited ache
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3846473/
https://www.ncbi.nlm.nih.gov/pubmed/24312449
http://dx.doi.org/10.1371/journal.pone.0079591
work_keys_str_mv AT lorabindranath insilicostudiesinprobingtheroleofkineticandstructuraleffectsofdifferentdrugsforthereactivationoftabuninhibitedache
AT chandarnellorebhanu insilicostudiesinprobingtheroleofkineticandstructuraleffectsofdifferentdrugsforthereactivationoftabuninhibitedache
AT kesharwanimanojk insilicostudiesinprobingtheroleofkineticandstructuraleffectsofdifferentdrugsforthereactivationoftabuninhibitedache
AT jainaastha insilicostudiesinprobingtheroleofkineticandstructuraleffectsofdifferentdrugsforthereactivationoftabuninhibitedache
AT gangulybishwajit insilicostudiesinprobingtheroleofkineticandstructuraleffectsofdifferentdrugsforthereactivationoftabuninhibitedache