Cargando…

A reliable and effective method of DNA isolation from old human blood paper cards

Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ag...

Descripción completa

Detalles Bibliográficos
Autores principales: Song, Yang, Fahs, Abrahim, Feldman, Charles, Shah, Suraj, Gu, Yali, Wang, Yifan, Machado, Roberto F, Wunderink, Richard G, Chen, Jiwang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847035/
https://www.ncbi.nlm.nih.gov/pubmed/24307984
http://dx.doi.org/10.1186/2193-1801-2-616
_version_ 1782293524284178432
author Song, Yang
Fahs, Abrahim
Feldman, Charles
Shah, Suraj
Gu, Yali
Wang, Yifan
Machado, Roberto F
Wunderink, Richard G
Chen, Jiwang
author_facet Song, Yang
Fahs, Abrahim
Feldman, Charles
Shah, Suraj
Gu, Yali
Wang, Yifan
Machado, Roberto F
Wunderink, Richard G
Chen, Jiwang
author_sort Song, Yang
collection PubMed
description Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ago. These DNA samples were used as templates for amplification of a single nucleotide polymorphism (SNP, C125T) region of human caspase-12 by PCR and a specific Taqman genotyping assay using the same amount of DNA. We show that DNA isolated by Tris–HCl buffer has higher yield and quality in comparison to DN131 solution. PCR success rate to amplify caspase-12 C125T SNP using Tris–HCl is comparable to the method using DN131 (89.5% vs 87.6%). The Taqman genotyping success rate using Tris–HCl is higher than using DN131 (81.9% vs 70.5%). Using TE or water, PCR success rates are lower than using DN131 (73.3% [TE]; 72.4% [H(2)O]), but Taqman genotyping success rates are comparable to the method using DN131 (70.5% [TE]; 79.1% [H(2)O]). We concluded that using Tris–HCl is a reliable and effective method to elute DNA from old human blood paper cards. The crude DNA isolated by Tris–HCl can be used to study genetic polymorphisms in human populations.
format Online
Article
Text
id pubmed-3847035
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-38470352013-12-04 A reliable and effective method of DNA isolation from old human blood paper cards Song, Yang Fahs, Abrahim Feldman, Charles Shah, Suraj Gu, Yali Wang, Yifan Machado, Roberto F Wunderink, Richard G Chen, Jiwang Springerplus Research Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ago. These DNA samples were used as templates for amplification of a single nucleotide polymorphism (SNP, C125T) region of human caspase-12 by PCR and a specific Taqman genotyping assay using the same amount of DNA. We show that DNA isolated by Tris–HCl buffer has higher yield and quality in comparison to DN131 solution. PCR success rate to amplify caspase-12 C125T SNP using Tris–HCl is comparable to the method using DN131 (89.5% vs 87.6%). The Taqman genotyping success rate using Tris–HCl is higher than using DN131 (81.9% vs 70.5%). Using TE or water, PCR success rates are lower than using DN131 (73.3% [TE]; 72.4% [H(2)O]), but Taqman genotyping success rates are comparable to the method using DN131 (70.5% [TE]; 79.1% [H(2)O]). We concluded that using Tris–HCl is a reliable and effective method to elute DNA from old human blood paper cards. The crude DNA isolated by Tris–HCl can be used to study genetic polymorphisms in human populations. Springer International Publishing 2013-11-19 /pmc/articles/PMC3847035/ /pubmed/24307984 http://dx.doi.org/10.1186/2193-1801-2-616 Text en © Song et al.; licensee Springer. 2013 This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Song, Yang
Fahs, Abrahim
Feldman, Charles
Shah, Suraj
Gu, Yali
Wang, Yifan
Machado, Roberto F
Wunderink, Richard G
Chen, Jiwang
A reliable and effective method of DNA isolation from old human blood paper cards
title A reliable and effective method of DNA isolation from old human blood paper cards
title_full A reliable and effective method of DNA isolation from old human blood paper cards
title_fullStr A reliable and effective method of DNA isolation from old human blood paper cards
title_full_unstemmed A reliable and effective method of DNA isolation from old human blood paper cards
title_short A reliable and effective method of DNA isolation from old human blood paper cards
title_sort reliable and effective method of dna isolation from old human blood paper cards
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847035/
https://www.ncbi.nlm.nih.gov/pubmed/24307984
http://dx.doi.org/10.1186/2193-1801-2-616
work_keys_str_mv AT songyang areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT fahsabrahim areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT feldmancharles areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT shahsuraj areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT guyali areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT wangyifan areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT machadorobertof areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT wunderinkrichardg areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT chenjiwang areliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT songyang reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT fahsabrahim reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT feldmancharles reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT shahsuraj reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT guyali reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT wangyifan reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT machadorobertof reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT wunderinkrichardg reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards
AT chenjiwang reliableandeffectivemethodofdnaisolationfromoldhumanbloodpapercards