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A reliable and effective method of DNA isolation from old human blood paper cards
Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ag...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847035/ https://www.ncbi.nlm.nih.gov/pubmed/24307984 http://dx.doi.org/10.1186/2193-1801-2-616 |
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author | Song, Yang Fahs, Abrahim Feldman, Charles Shah, Suraj Gu, Yali Wang, Yifan Machado, Roberto F Wunderink, Richard G Chen, Jiwang |
author_facet | Song, Yang Fahs, Abrahim Feldman, Charles Shah, Suraj Gu, Yali Wang, Yifan Machado, Roberto F Wunderink, Richard G Chen, Jiwang |
author_sort | Song, Yang |
collection | PubMed |
description | Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ago. These DNA samples were used as templates for amplification of a single nucleotide polymorphism (SNP, C125T) region of human caspase-12 by PCR and a specific Taqman genotyping assay using the same amount of DNA. We show that DNA isolated by Tris–HCl buffer has higher yield and quality in comparison to DN131 solution. PCR success rate to amplify caspase-12 C125T SNP using Tris–HCl is comparable to the method using DN131 (89.5% vs 87.6%). The Taqman genotyping success rate using Tris–HCl is higher than using DN131 (81.9% vs 70.5%). Using TE or water, PCR success rates are lower than using DN131 (73.3% [TE]; 72.4% [H(2)O]), but Taqman genotyping success rates are comparable to the method using DN131 (70.5% [TE]; 79.1% [H(2)O]). We concluded that using Tris–HCl is a reliable and effective method to elute DNA from old human blood paper cards. The crude DNA isolated by Tris–HCl can be used to study genetic polymorphisms in human populations. |
format | Online Article Text |
id | pubmed-3847035 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-38470352013-12-04 A reliable and effective method of DNA isolation from old human blood paper cards Song, Yang Fahs, Abrahim Feldman, Charles Shah, Suraj Gu, Yali Wang, Yifan Machado, Roberto F Wunderink, Richard G Chen, Jiwang Springerplus Research Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris–HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ago. These DNA samples were used as templates for amplification of a single nucleotide polymorphism (SNP, C125T) region of human caspase-12 by PCR and a specific Taqman genotyping assay using the same amount of DNA. We show that DNA isolated by Tris–HCl buffer has higher yield and quality in comparison to DN131 solution. PCR success rate to amplify caspase-12 C125T SNP using Tris–HCl is comparable to the method using DN131 (89.5% vs 87.6%). The Taqman genotyping success rate using Tris–HCl is higher than using DN131 (81.9% vs 70.5%). Using TE or water, PCR success rates are lower than using DN131 (73.3% [TE]; 72.4% [H(2)O]), but Taqman genotyping success rates are comparable to the method using DN131 (70.5% [TE]; 79.1% [H(2)O]). We concluded that using Tris–HCl is a reliable and effective method to elute DNA from old human blood paper cards. The crude DNA isolated by Tris–HCl can be used to study genetic polymorphisms in human populations. Springer International Publishing 2013-11-19 /pmc/articles/PMC3847035/ /pubmed/24307984 http://dx.doi.org/10.1186/2193-1801-2-616 Text en © Song et al.; licensee Springer. 2013 This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Song, Yang Fahs, Abrahim Feldman, Charles Shah, Suraj Gu, Yali Wang, Yifan Machado, Roberto F Wunderink, Richard G Chen, Jiwang A reliable and effective method of DNA isolation from old human blood paper cards |
title | A reliable and effective method of DNA isolation from old human blood paper cards |
title_full | A reliable and effective method of DNA isolation from old human blood paper cards |
title_fullStr | A reliable and effective method of DNA isolation from old human blood paper cards |
title_full_unstemmed | A reliable and effective method of DNA isolation from old human blood paper cards |
title_short | A reliable and effective method of DNA isolation from old human blood paper cards |
title_sort | reliable and effective method of dna isolation from old human blood paper cards |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847035/ https://www.ncbi.nlm.nih.gov/pubmed/24307984 http://dx.doi.org/10.1186/2193-1801-2-616 |
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