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The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation

Arctica islandica is known as the longest-lived non-colonial metazoan species on earth and is therefore increasingly being investigated as a new model in aging research. As the mitochondrial genome is associated with the process of aging in many species and bivalves are known to possess a peculiar m...

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Autores principales: Glöckner, Gernot, Heinze, Ivonne, Platzer, Matthias, Held, Christoph, Abele, Doris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847043/
https://www.ncbi.nlm.nih.gov/pubmed/24312674
http://dx.doi.org/10.1371/journal.pone.0082857
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author Glöckner, Gernot
Heinze, Ivonne
Platzer, Matthias
Held, Christoph
Abele, Doris
author_facet Glöckner, Gernot
Heinze, Ivonne
Platzer, Matthias
Held, Christoph
Abele, Doris
author_sort Glöckner, Gernot
collection PubMed
description Arctica islandica is known as the longest-lived non-colonial metazoan species on earth and is therefore increasingly being investigated as a new model in aging research. As the mitochondrial genome is associated with the process of aging in many species and bivalves are known to possess a peculiar mechanism of mitochondrial genome inheritance including doubly uniparental inheritance (DUI), we aimed to assess the genomic variability of the A. islandica mitochondrial DNA (mtDNA). We sequenced the complete mitochondrial genomes of A. islandica specimens from three different sites in the Western Palaearctic (Iceland, North Sea, Baltic Sea). We found the A. islandica mtDNA to fall within the normal size range (18 kb) and exhibit similar coding capacity as other animal mtDNAs. The concatenated protein sequences of all currently known Veneroidea mtDNAs were used to robustly place A. islandica in a phylogenetic framework. Analysis of the observed single nucleotide polymorphism (SNP) patterns on further specimen revealed two prevailing haplotypes. Populations in the Baltic and the North Sea are very homogenous, whereas the Icelandic population, from which exceptionally old individuals have been collected, is the most diverse one. Homogeneity in Baltic and North Sea populations point to either stronger environmental constraints or more recent colonization of the habitat. Our analysis lays the foundation for further studies on A. islandica population structures, age research with this organism, and for phylogenetic studies. Accessions for the mitochondrial genome sequences: KC197241 Iceland; KF363951 Baltic Sea; KF363952 North Sea; KF465708 to KF465758 individual amplified regions from different speciemen
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spelling pubmed-38470432013-12-05 The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation Glöckner, Gernot Heinze, Ivonne Platzer, Matthias Held, Christoph Abele, Doris PLoS One Research Article Arctica islandica is known as the longest-lived non-colonial metazoan species on earth and is therefore increasingly being investigated as a new model in aging research. As the mitochondrial genome is associated with the process of aging in many species and bivalves are known to possess a peculiar mechanism of mitochondrial genome inheritance including doubly uniparental inheritance (DUI), we aimed to assess the genomic variability of the A. islandica mitochondrial DNA (mtDNA). We sequenced the complete mitochondrial genomes of A. islandica specimens from three different sites in the Western Palaearctic (Iceland, North Sea, Baltic Sea). We found the A. islandica mtDNA to fall within the normal size range (18 kb) and exhibit similar coding capacity as other animal mtDNAs. The concatenated protein sequences of all currently known Veneroidea mtDNAs were used to robustly place A. islandica in a phylogenetic framework. Analysis of the observed single nucleotide polymorphism (SNP) patterns on further specimen revealed two prevailing haplotypes. Populations in the Baltic and the North Sea are very homogenous, whereas the Icelandic population, from which exceptionally old individuals have been collected, is the most diverse one. Homogeneity in Baltic and North Sea populations point to either stronger environmental constraints or more recent colonization of the habitat. Our analysis lays the foundation for further studies on A. islandica population structures, age research with this organism, and for phylogenetic studies. Accessions for the mitochondrial genome sequences: KC197241 Iceland; KF363951 Baltic Sea; KF363952 North Sea; KF465708 to KF465758 individual amplified regions from different speciemen Public Library of Science 2013-12-02 /pmc/articles/PMC3847043/ /pubmed/24312674 http://dx.doi.org/10.1371/journal.pone.0082857 Text en © 2013 Glöckner et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Glöckner, Gernot
Heinze, Ivonne
Platzer, Matthias
Held, Christoph
Abele, Doris
The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title_full The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title_fullStr The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title_full_unstemmed The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title_short The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
title_sort mitochondrial genome of arctica islandica; phylogeny and variation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847043/
https://www.ncbi.nlm.nih.gov/pubmed/24312674
http://dx.doi.org/10.1371/journal.pone.0082857
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