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Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox

The demonstration that humans can learn to modulate their own brain activity based on feedback of neurophysiological signals opened up exciting opportunities for fundamental and applied neuroscience. Although EEG-based neurofeedback has been long employed both in experimental and clinical investigat...

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Autores principales: Sato, João R., Basilio, Rodrigo, Paiva, Fernando F., Garrido, Griselda J., Bramati, Ivanei E., Bado, Patricia, Tovar-Moll, Fernanda, Zahn, Roland, Moll, Jorge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847114/
https://www.ncbi.nlm.nih.gov/pubmed/24312569
http://dx.doi.org/10.1371/journal.pone.0081658
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author Sato, João R.
Basilio, Rodrigo
Paiva, Fernando F.
Garrido, Griselda J.
Bramati, Ivanei E.
Bado, Patricia
Tovar-Moll, Fernanda
Zahn, Roland
Moll, Jorge
author_facet Sato, João R.
Basilio, Rodrigo
Paiva, Fernando F.
Garrido, Griselda J.
Bramati, Ivanei E.
Bado, Patricia
Tovar-Moll, Fernanda
Zahn, Roland
Moll, Jorge
author_sort Sato, João R.
collection PubMed
description The demonstration that humans can learn to modulate their own brain activity based on feedback of neurophysiological signals opened up exciting opportunities for fundamental and applied neuroscience. Although EEG-based neurofeedback has been long employed both in experimental and clinical investigation, functional MRI (fMRI)-based neurofeedback emerged as a promising method, given its superior spatial resolution and ability to gauge deep cortical and subcortical brain regions. In combination with improved computational approaches, such as pattern recognition analysis (e.g., Support Vector Machines, SVM), fMRI neurofeedback and brain decoding represent key innovations in the field of neuromodulation and functional plasticity. Expansion in this field and its applications critically depend on the existence of freely available, integrated and user-friendly tools for the neuroimaging research community. Here, we introduce FRIEND, a graphic-oriented user-friendly interface package for fMRI neurofeedback and real-time multivoxel pattern decoding. The package integrates routines for image preprocessing in real-time, ROI-based feedback (single-ROI BOLD level and functional connectivity) and brain decoding-based feedback using SVM. FRIEND delivers an intuitive graphic interface with flexible processing pipelines involving optimized procedures embedding widely validated packages, such as FSL and libSVM. In addition, a user-defined visual neurofeedback module allows users to easily design and run fMRI neurofeedback experiments using ROI-based or multivariate classification approaches. FRIEND is open-source and free for non-commercial use. Processing tutorials and extensive documentation are available.
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spelling pubmed-38471142013-12-05 Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox Sato, João R. Basilio, Rodrigo Paiva, Fernando F. Garrido, Griselda J. Bramati, Ivanei E. Bado, Patricia Tovar-Moll, Fernanda Zahn, Roland Moll, Jorge PLoS One Research Article The demonstration that humans can learn to modulate their own brain activity based on feedback of neurophysiological signals opened up exciting opportunities for fundamental and applied neuroscience. Although EEG-based neurofeedback has been long employed both in experimental and clinical investigation, functional MRI (fMRI)-based neurofeedback emerged as a promising method, given its superior spatial resolution and ability to gauge deep cortical and subcortical brain regions. In combination with improved computational approaches, such as pattern recognition analysis (e.g., Support Vector Machines, SVM), fMRI neurofeedback and brain decoding represent key innovations in the field of neuromodulation and functional plasticity. Expansion in this field and its applications critically depend on the existence of freely available, integrated and user-friendly tools for the neuroimaging research community. Here, we introduce FRIEND, a graphic-oriented user-friendly interface package for fMRI neurofeedback and real-time multivoxel pattern decoding. The package integrates routines for image preprocessing in real-time, ROI-based feedback (single-ROI BOLD level and functional connectivity) and brain decoding-based feedback using SVM. FRIEND delivers an intuitive graphic interface with flexible processing pipelines involving optimized procedures embedding widely validated packages, such as FSL and libSVM. In addition, a user-defined visual neurofeedback module allows users to easily design and run fMRI neurofeedback experiments using ROI-based or multivariate classification approaches. FRIEND is open-source and free for non-commercial use. Processing tutorials and extensive documentation are available. Public Library of Science 2013-12-02 /pmc/articles/PMC3847114/ /pubmed/24312569 http://dx.doi.org/10.1371/journal.pone.0081658 Text en © 2013 Sato et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Sato, João R.
Basilio, Rodrigo
Paiva, Fernando F.
Garrido, Griselda J.
Bramati, Ivanei E.
Bado, Patricia
Tovar-Moll, Fernanda
Zahn, Roland
Moll, Jorge
Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title_full Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title_fullStr Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title_full_unstemmed Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title_short Real-Time fMRI Pattern Decoding and Neurofeedback Using FRIEND: An FSL-Integrated BCI Toolbox
title_sort real-time fmri pattern decoding and neurofeedback using friend: an fsl-integrated bci toolbox
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847114/
https://www.ncbi.nlm.nih.gov/pubmed/24312569
http://dx.doi.org/10.1371/journal.pone.0081658
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