Cargando…

A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals

BACKGROUND: Chemicals generically referred to as flavonoids belong to the group of phenolic compounds and constitute an important group of secondary metabolites due to their applications as well as their biochemical properties. Flavonoids, which share a common benzo- γ-pyrone structure, constitute a...

Descripción completa

Detalles Bibliográficos
Autor principal: Glossman-Mitnik, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848488/
https://www.ncbi.nlm.nih.gov/pubmed/24041114
http://dx.doi.org/10.1186/1752-153X-7-155
_version_ 1782293765681053696
author Glossman-Mitnik, Daniel
author_facet Glossman-Mitnik, Daniel
author_sort Glossman-Mitnik, Daniel
collection PubMed
description BACKGROUND: Chemicals generically referred to as flavonoids belong to the group of phenolic compounds and constitute an important group of secondary metabolites due to their applications as well as their biochemical properties. Flavonoids, which share a common benzo- γ-pyrone structure, constitute a kind of compound which are highly ubiquitous in the plant kingdom. FINDINGS: The M06 family of density functionals has been assessed for the calculation of the molecular structure and properties of the Naringenin flavonoid. The chemical reactivity descriptors have been calculated through Conceptual DFT. The active sites for nucleophilic and electrophilic attacks have been chosen by relating them to the Fukui function indices and the dual descriptor f((2))(r). A comparison between the descriptors calculated through vertical energy values and those arising from the Koopmans’ theorem approximation have been performed in order to check for the validity of the last procedure. CONCLUSIONS: The M06 family of density functionals (M06, M06L, M06-2X and M06-HF) used in the present work leads to the same qualitatively and quantitatively similar description of the chemistry and reactivity of the Naringenin molecule, yielding reasonable results. However, for the case of the M06-2X and M06-HF density functionals, which include a large portion of HF exchange, the calculations considering the validity of the Koopmans’ theorem lead to negative electron affinities.
format Online
Article
Text
id pubmed-3848488
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-38484882013-12-05 A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals Glossman-Mitnik, Daniel Chem Cent J Short Report BACKGROUND: Chemicals generically referred to as flavonoids belong to the group of phenolic compounds and constitute an important group of secondary metabolites due to their applications as well as their biochemical properties. Flavonoids, which share a common benzo- γ-pyrone structure, constitute a kind of compound which are highly ubiquitous in the plant kingdom. FINDINGS: The M06 family of density functionals has been assessed for the calculation of the molecular structure and properties of the Naringenin flavonoid. The chemical reactivity descriptors have been calculated through Conceptual DFT. The active sites for nucleophilic and electrophilic attacks have been chosen by relating them to the Fukui function indices and the dual descriptor f((2))(r). A comparison between the descriptors calculated through vertical energy values and those arising from the Koopmans’ theorem approximation have been performed in order to check for the validity of the last procedure. CONCLUSIONS: The M06 family of density functionals (M06, M06L, M06-2X and M06-HF) used in the present work leads to the same qualitatively and quantitatively similar description of the chemistry and reactivity of the Naringenin molecule, yielding reasonable results. However, for the case of the M06-2X and M06-HF density functionals, which include a large portion of HF exchange, the calculations considering the validity of the Koopmans’ theorem lead to negative electron affinities. BioMed Central 2013-09-16 /pmc/articles/PMC3848488/ /pubmed/24041114 http://dx.doi.org/10.1186/1752-153X-7-155 Text en Copyright © 2013 Glossman-Mitnik; licensee Chemistry Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Report
Glossman-Mitnik, Daniel
A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title_full A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title_fullStr A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title_full_unstemmed A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title_short A comparison of the chemical reactivity of naringenin calculated with the M06 family of density functionals
title_sort comparison of the chemical reactivity of naringenin calculated with the m06 family of density functionals
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848488/
https://www.ncbi.nlm.nih.gov/pubmed/24041114
http://dx.doi.org/10.1186/1752-153X-7-155
work_keys_str_mv AT glossmanmitnikdaniel acomparisonofthechemicalreactivityofnaringenincalculatedwiththem06familyofdensityfunctionals
AT glossmanmitnikdaniel comparisonofthechemicalreactivityofnaringenincalculatedwiththem06familyofdensityfunctionals