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Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’

BACKGROUND: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult...

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Autores principales: Balke, Michael, Schmidt, Stefan, Hausmann, Axel, Toussaint, Emmanuel FA, Bergsten, Johannes, Buffington, Matthew, Häuser, Christoph L, Kroupa, Alexander, Hagedorn, Gregor, Riedel, Alexander, Polaszek, Andrew, Ubaidillah, Rosichon, Krogmann, Lars, Zwick, Andreas, Fikáček, Martin, Hájek, Jiří, Michat, Mariano C, Dietrich, Christopher, La Salle, John, Mantle, Beth, Ng, Peter KL, Hobern, Donald
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848749/
https://www.ncbi.nlm.nih.gov/pubmed/24044698
http://dx.doi.org/10.1186/1742-9994-10-55
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author Balke, Michael
Schmidt, Stefan
Hausmann, Axel
Toussaint, Emmanuel FA
Bergsten, Johannes
Buffington, Matthew
Häuser, Christoph L
Kroupa, Alexander
Hagedorn, Gregor
Riedel, Alexander
Polaszek, Andrew
Ubaidillah, Rosichon
Krogmann, Lars
Zwick, Andreas
Fikáček, Martin
Hájek, Jiří
Michat, Mariano C
Dietrich, Christopher
La Salle, John
Mantle, Beth
Ng, Peter KL
Hobern, Donald
author_facet Balke, Michael
Schmidt, Stefan
Hausmann, Axel
Toussaint, Emmanuel FA
Bergsten, Johannes
Buffington, Matthew
Häuser, Christoph L
Kroupa, Alexander
Hagedorn, Gregor
Riedel, Alexander
Polaszek, Andrew
Ubaidillah, Rosichon
Krogmann, Lars
Zwick, Andreas
Fikáček, Martin
Hájek, Jiří
Michat, Mariano C
Dietrich, Christopher
La Salle, John
Mantle, Beth
Ng, Peter KL
Hobern, Donald
author_sort Balke, Michael
collection PubMed
description BACKGROUND: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis. DISCUSSION: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection. The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general. Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of “gems” of undescribed species hidden in museum accessions. SUMMARY: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world’s natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause.
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spelling pubmed-38487492013-12-04 Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’ Balke, Michael Schmidt, Stefan Hausmann, Axel Toussaint, Emmanuel FA Bergsten, Johannes Buffington, Matthew Häuser, Christoph L Kroupa, Alexander Hagedorn, Gregor Riedel, Alexander Polaszek, Andrew Ubaidillah, Rosichon Krogmann, Lars Zwick, Andreas Fikáček, Martin Hájek, Jiří Michat, Mariano C Dietrich, Christopher La Salle, John Mantle, Beth Ng, Peter KL Hobern, Donald Front Zool Commentary BACKGROUND: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis. DISCUSSION: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection. The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general. Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of “gems” of undescribed species hidden in museum accessions. SUMMARY: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world’s natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause. BioMed Central 2013-09-17 /pmc/articles/PMC3848749/ /pubmed/24044698 http://dx.doi.org/10.1186/1742-9994-10-55 Text en Copyright © 2013 Balke et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Balke, Michael
Schmidt, Stefan
Hausmann, Axel
Toussaint, Emmanuel FA
Bergsten, Johannes
Buffington, Matthew
Häuser, Christoph L
Kroupa, Alexander
Hagedorn, Gregor
Riedel, Alexander
Polaszek, Andrew
Ubaidillah, Rosichon
Krogmann, Lars
Zwick, Andreas
Fikáček, Martin
Hájek, Jiří
Michat, Mariano C
Dietrich, Christopher
La Salle, John
Mantle, Beth
Ng, Peter KL
Hobern, Donald
Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title_full Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title_fullStr Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title_full_unstemmed Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title_short Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’
title_sort biodiversity into your hands - a call for a virtual global natural history ‘metacollection’
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848749/
https://www.ncbi.nlm.nih.gov/pubmed/24044698
http://dx.doi.org/10.1186/1742-9994-10-55
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