Cargando…

Detection of persistent organic pollutants binding modes with androgen receptor ligand binding domain by docking and molecular dynamics

BACKGROUND: Persistent organic pollutants (POPs) are persistent in the environment after release from industrial compounds, combustion productions or pesticides. The exposure of POPs has been related to various reproductive disturbances, such as reduced semen quality, testicular cancer, and imbalanc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xu, Xian Jin, Su, Ji Guo, Bizzarri, Anna Rita, Cannistraro, Salvatore, Liu, Ming, Zeng, Yi, Chen, Wei Zu, Wang, Cun Xin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848780/ https://www.ncbi.nlm.nih.gov/pubmed/24053684 http://dx.doi.org/10.1186/1472-6807-13-16

Ejemplares similares

Structure of the homodimeric androgen receptor ligand-binding domain
por: Nadal, Marta, et al.
Publicado: (2017)

Investigation of a Direct Interaction between miR4749 and the Tumor Suppressor p53 by Fluorescence, FRET and Molecular Modeling
por: Bizzarri, Anna Rita, et al.
Publicado: (2020)

Toward Cancer Diagnostics of the Tumor Suppressor p53 by Surface Enhanced Raman Spectroscopy
por: Bizzarri, Anna Rita, et al.
Publicado: (2020)

Direct Interaction of miRNA and circRNA with the Oncosuppressor p53: An Intriguing Perspective in Cancer Research
por: Bizzarri, Anna Rita, et al.
Publicado: (2021)

Data on the mode of binding between avenanthramides and IKKβ domains in a docking model
por: Kang, Chounghun, et al.
Publicado: (2018)

Binding mode information improves fragment docking
por: Jacquemard, Célien, et al.
Publicado: (2019)

Structural basis for ligand binding modes of CTP synthase
por: Zhou, Xian, et al.
Publicado: (2021)

SERS-based nanobiosensing for ultrasensitive detection of the p53 tumor suppressor
por: Domenici, Fabio, et al.
Publicado: (2011)

Surface Plasmon Resonance Sensing of Biorecognition Interactions within the Tumor Suppressor p53 Network
por: Moscetti, Ilaria, et al.
Publicado: (2017)

Imaging and kinetics of the bimolecular complex formed by the tumor suppressor p53 with ubiquitin ligase COP1 as studied by atomic force microscopy and surface plasmon resonance
por: Moscetti, Ilaria, et al.
Publicado: (2018)

Raman Evidence of p53-DBD Disorder Decrease upon Interaction with the Anticancer Protein Azurin
por: Signorelli, Sara, et al.
Publicado: (2019)

Interaction of miR-155 with Human Serum Albumin: An Atomic Force Spectroscopy, Fluorescence, FRET, and Computational Modelling Evidence
por: Botti, Valentina, et al.
Publicado: (2022)

CHARMM-GUI-Based Induced Fit Docking Workflow to Generate Reliable Protein–Ligand Binding Modes
por: Guterres, Hugo, et al.
Publicado: (2023)

Modeling the binding of diverse ligands within the Ah receptor ligand binding domain
por: Giani Tagliabue, Sara, et al.
Publicado: (2019)

Functional Effects In Silico Prediction for Androgen Receptor Ligand-Binding Domain Novel I836S Mutation
por: Rayevsky, Alexey, et al.
Publicado: (2021)

CoDock-Ligand: combined template-based docking and CNN-based scoring in ligand binding prediction
por: Pang, Mingwei, et al.
Publicado: (2023)

Landscape of protein–small ligand binding modes
por: Kasahara, Kota, et al.
Publicado: (2016)

Structure and ligand binding of the ADP-binding domain of the NAD(+) riboswitch
por: Huang, Lin, et al.
Publicado: (2020)

Systematic and functional characterization of novel androgen receptor variants arising from alternative splicing in the ligand-binding domain
por: Uo, T, et al.
Publicado: (2017)

The T850D Phosphomimetic Mutation in the Androgen Receptor Ligand Binding Domain Enhances Recruitment at Activation Function 2
por: Helsen, Christine, et al.
Publicado: (2022)

Interaction between miR4749 and Human Serum Albumin as Revealed by Fluorescence, FRET, Atomic Force Spectroscopy and Computational Modelling
por: Botti, Valentina, et al.
Publicado: (2022)

COACH-D: improved protein–ligand binding sites prediction with refined ligand-binding poses through molecular docking
por: Wu, Qi, et al.
Publicado: (2018)

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility
por: Ravindranath, Pradeep Anand, et al.
Publicado: (2015)

Novel missense mutation in ligand binding domain of AR gene identified in patient with androgen insensitivity syndrome from Ukraine
por: Sirokha, Dmytro, et al.
Publicado: (2020)

Structural Dynamics of the Cereblon Ligand Binding Domain
por: Hartmann, Marcus D., et al.
Publicado: (2015)

Ligand docking and binding site analysis with PyMOL and Autodock/Vina
por: Seeliger, Daniel, et al.
Publicado: (2010)

GalaxySite: ligand-binding-site prediction by using molecular docking
por: Heo, Lim, et al.
Publicado: (2014)

Benzimidazole inhibitors of the protein kinase CHK2: Clarification of the binding mode by flexible side chain docking and protein–ligand crystallography
por: Matijssen, Cornelis, et al.
Publicado: (2012)

Binding mode of triazole derivatives as aromatase inhibitors based on docking, protein ligand interaction fingerprinting, and molecular dynamics simulation studies
por: Mojaddami, Ayyub, et al.
Publicado: (2017)

Interaction of an anticancer peptide fragment of azurin with p53 and its isolated domains studied by atomic force spectroscopy
por: Bizzarri, Anna Rita, et al.
Publicado: (2011)

Dissimilar Ligands Bind in a Similar Fashion: A Guide to Ligand Binding-Mode Prediction with Application to CELPP Studies
por: Xu, Xianjin, et al.
Publicado: (2021)

MDM2–MDM4 molecular interaction investigated by atomic force spectroscopy and surface plasmon resonance
por: Moscetti, Ilaria, et al.
Publicado: (2016)

Hybridization Kinetics of miR-155 on Gold Surfaces as Investigated by Surface Plasmon Resonance and Atomic Force Spectroscopy
por: Botti, Valentina, et al.
Publicado: (2023)

Computational Analysis of Residue-Specific Binding Free Energies of Androgen Receptor to Ligands
por: Shao, Guangfeng, et al.
Publicado: (2021)

Mechanistic Investigation of the Androgen Receptor DNA-Binding Domain Inhibitor Pyrvinium
por: Pal, Sumanta K., et al.
Publicado: (2019)

Structural Features and Binding Modes of Thioether-Cyclized Peptide Ligands
por: Otero-Ramirez, Manuel E., et al.
Publicado: (2018)

Structural basis of ligand binding modes of human EAAT2
por: Zhang, Zhenglai, et al.
Publicado: (2022)

Transthyretin Binding Mode Dichotomy of Fluorescent trans-Stilbene Ligands
por: Begum, Afshan, et al.
Publicado: (2023)

Evaluating the binding efficiency of pheromone binding protein with its natural ligand using molecular docking and fluorescence analysis
por: Ilayaraja, Renganathan, et al.
Publicado: (2014)

Ligand Binding Induces Agonistic-Like Conformational Adaptations in Helix 12 of Progesterone Receptor Ligand Binding Domain
por: Zheng, Liangzhen, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_kha6nop129nqm6lapiarv9atfg