Cargando…
Jaccard index based similarity measure to compare transcription factor binding site models
BACKGROUND: Positional weight matrix (PWM) remains the most popular for quantification of transcription factor (TF) binding. PWM supplied with a score threshold defines a set of putative transcription factor binding sites (TFBS), thus providing a TFBS model. TF binding DNA fragments obtained by diff...
Autores principales: | Vorontsov, Ilya E, Kulakovskiy, Ivan V, Makeev, Vsevolod J |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851813/ https://www.ncbi.nlm.nih.gov/pubmed/24074225 http://dx.doi.org/10.1186/1748-7188-8-23 |
Ejemplares similares
-
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
por: Kulakovskiy, Ivan V., et al.
Publicado: (2013) -
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data
por: Vorontsov, Ilya E., et al.
Publicado: (2018) -
Measuring similarities between transcription factor binding sites
por: Kielbasa, Szymon M, et al.
Publicado: (2005) -
Negative selection maintains transcription factor binding motifs in human cancer
por: Vorontsov, Ilya E., et al.
Publicado: (2016) -
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
por: Kulakovskiy, Ivan V., et al.
Publicado: (2016)