Cargando…

On the inversion-indel distance

BACKGROUND: The inversion distance, that is the distance between two unichromosomal genomes with the same content allowing only inversions of DNA segments, can be computed thanks to a pioneering approach of Hannenhalli and Pevzner in 1995. In 2000, El-Mabrouk extended the inversion model to allow th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Willing, Eyla, Zaccaria, Simone, Braga, Marília DV, Stoye, Jens
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851949/ https://www.ncbi.nlm.nih.gov/pubmed/24564182 http://dx.doi.org/10.1186/1471-2105-14-S15-S3

Ejemplares similares

On the weight of indels in genomic distances
por: Braga, Marília D V, et al.
Publicado: (2011)

Restricted DCJ-indel model: sorting linear genomes with DCJ and indels
por: da Silva, Poly H, et al.
Publicado: (2012)

Genomic distance under gene substitutions
por: Braga, Marília D V, et al.
Publicado: (2011)

DCJ-indel and DCJ-substitution distances with distinct operation costs
por: da Silva, Poly H, et al.
Publicado: (2013)

On the family-free DCJ distance and similarity
por: Martinez, Fábio V, et al.
Publicado: (2015)

Computing the Rearrangement Distance of Natural Genomes
por: Bohnenkämper, Leonard, et al.
Publicado: (2021)

Generalizations of the genomic rank distance to indels
por: Pereira Zanetti, João Paulo, et al.
Publicado: (2023)

Multiple genome comparison based on overlap regions of pairwise local alignments
por: Jahn, Katharina, et al.
Publicado: (2012)

Gene family assignment-free comparative genomics
por: Doerr, Daniel, et al.
Publicado: (2012)

Statistics for approximate gene clusters
por: Jahn, Katharina, et al.
Publicado: (2013)

Identifying micro-inversions using high-throughput sequencing reads
por: He, Feifei, et al.
Publicado: (2016)

Approximating the DCJ distance of balanced genomes in linear time
por: Rubert, Diego P., et al.
Publicado: (2017)

Biclustering of microarray data with MOSPO based on crowding distance
por: Liu, Junwan, et al.
Publicado: (2009)

On the selection of appropriate distances for gene expression data clustering
por: Jaskowiak, Pablo A, et al.
Publicado: (2014)

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
por: Ander, Christina, et al.
Publicado: (2013)

Distance-based phenotypic association analysis of DNA sequence data
por: Chung, Doyoung, et al.
Publicado: (2011)

Approximating the double-cut-and-join distance between unsigned genomes
por: Chen, Xin, et al.
Publicado: (2011)

On pairwise distances and median score of three genomes under DCJ
por: Aganezov, Sergey, et al.
Publicado: (2012)

Association screening for genes with multiple potentially rare variants: an inverse-probability weighted clustering approach
por: Liu, Ying, et al.
Publicado: (2011)

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion
por: Shao, Mingfu, et al.
Publicado: (2012)

NWE: Node-weighted expansion for protein complex prediction using random walk distances
por: Maruyama, Osamu, et al.
Publicado: (2011)

Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation
por: Xu, Ruifeng, et al.
Publicado: (2015)

Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy
por: Sun, Yanni, et al.
Publicado: (2012)

Using distances between Top-n-gram and residue pairs for protein remote homology detection
por: Liu, Bin, et al.
Publicado: (2014)

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns
por: Pires, Douglas EV, et al.
Publicado: (2011)

A practical O(n log(2 )n) time algorithm for computing the triplet distance on binary trees
por: Sand, Andreas, et al.
Publicado: (2013)

PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions
por: Hertz, Tomer, et al.
Publicado: (2006)

Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships
por: Song, Renhua, et al.
Publicado: (2015)

Indel Reliability in Indel-Based Phylogenetic Inference
por: Ashkenazy, Haim, et al.
Publicado: (2014)

UPS-indel: a Universal Positioning System for Indels
por: Hasan, Mohammad Shabbir, et al.
Publicado: (2017)

Calling large indels in 1047 Arabidopsis with IndelEnsembler
por: Liu, Dong-Xu, et al.
Publicado: (2021)

Indelible Ink
Publicado: (1870)

Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes
por: Zollanvari, Amin, et al.
Publicado: (2009)

Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
por: Chen, Yen-Ho, et al.
Publicado: (2023)

IndelFR: a database of indels in protein structures and their flanking regions
por: Zhang, Zheng, et al.
Publicado: (2012)

Indel detection from DNA and RNA sequencing data with transIndel
por: Yang, Rendong, et al.
Publicado: (2018)

IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations
por: Churkin, Alexander, et al.
Publicado: (2022)

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
por: Wang, Ying, et al.
Publicado: (2011)

To indel or not to indel: Factors influencing mutagenesis during chromosomal break end joining
por: Cisneros-Aguirre, Metztli, et al.
Publicado: (2022)

Natural family-free genomic distance
por: Rubert, Diego P., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_e981fjrrrhlca5uslbpvt1d02e