Cargando…

Mining the tissue-tissue gene co-expression network for tumor microenvironment study and biomarker prediction

BACKGROUND: Recent discovery in tumor development indicates that the tumor microenvironment (mostly stroma cells) plays an important role in cancer development. To understand how the tumor microenvironment (TME) interacts with the tumor, we explore the correlation of the gene expressions between tum...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xiang, Yang, Zhang, Jie, Huang, Kun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852209/ https://www.ncbi.nlm.nih.gov/pubmed/24564578 http://dx.doi.org/10.1186/1471-2164-14-S5-S4

Ejemplares similares

Condition-specific gene co-expression network mining identifies key pathways and regulators in the brain tissue of Alzheimer’s disease patients
por: Xiang, Shunian, et al.
Publicado: (2018)

Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability
por: Zhang, Jie, et al.
Publicado: (2012)

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia
por: Zhang, Jie, et al.
Publicado: (2010)

Gene communities in co-expression networks across different tissues
por: Russell, Madison, et al.
Publicado: (2023)

Gene communities in co-expression networks across different tissues
por: Russell, Madison, et al.
Publicado: (2023)

Prediction of disease genes using tissue-specified gene-gene network
por: Ganegoda, Gamage Upeksha, et al.
Publicado: (2014)

Predicting glioblastoma prognosis networks using weighted gene co-expression network analysis on TCGA data
por: Xiang, Yang, et al.
Publicado: (2012)

Effects of Different Tissue Microenvironments on Gene Expression in Breast Cancer Cells
por: Rondeau, Gaelle, et al.
Publicado: (2014)

Identification of tumor microenvironment-related genes in lower-grade gliomas by mining TCGA database
por: Liang, Huaizhen, et al.
Publicado: (2020)

Finding biological process modifications in cancer tissues by mining gene expression correlations
por: Gamberoni, Giacomo, et al.
Publicado: (2006)

Tissue Elasticity Regulated Tumor Gene Expression: Implication for Diagnostic Biomarkers of Primitive Neuroectodermal Tumor
por: Vu, Long T., et al.
Publicado: (2015)

Tissue factor in tumor microenvironment: a systematic review
por: Han, Xiao, et al.
Publicado: (2014)

Tissue-Dependent Tumor Microenvironments and Their Impact on Immunotherapy Responses
por: Oliver, Amanda J., et al.
Publicado: (2018)

Tissue‐specific tumor microenvironments influence responses to immunotherapies
por: Oliver, Amanda J, et al.
Publicado: (2019)

Multiplex Tissue Imaging: Spatial Revelations in the Tumor Microenvironment
por: van Dam, Stephanie, et al.
Publicado: (2022)

Mining TCGA database for gene expression in ovarian serous cystadenocarcinoma microenvironment
por: Xu, Youzheng, et al.
Publicado: (2021)

Bioinformatics analysis reveals the competing endogenous RNA (ceRNA) coexpression network in the tumor microenvironment and prognostic biomarkers in soft tissue sarcomas
por: Zou, Dandan, et al.
Publicado: (2021)

Identifying Biomarkers to Predict the Prognosis of Biliary Atresia by Weighted Gene Co-Expression Network Analysis
por: Kong, Meng, et al.
Publicado: (2021)

Identifying Potential Biomarkers of Prognostic Value in Colorectal Cancer via Tumor Microenvironment Data Mining
por: Li, Lei, et al.
Publicado: (2022)

Single-nuclei and bulk-tissue gene-expression analysis of pheochromocytoma and paraganglioma links disease subtypes with tumor microenvironment
por: Zethoven, Magnus, et al.
Publicado: (2022)

Identify potential driver genes for PAX-FOXO1 fusion-negative rhabdomyosarcoma through frequent gene co-expression network mining
por: Zhan, Xiaohui, et al.
Publicado: (2023)

Development of a ferroptosis-based model to predict prognosis, tumor microenvironment, and drug response for lung adenocarcinoma with weighted genes co-expression network analysis
por: Cheng, Tao, et al.
Publicado: (2022)

Vascular Bed–specific Expression of an Endothelial Cell Gene Is Programmed by the Tissue Microenvironment
por: Aird, William C., et al.
Publicado: (1997)

Epithelial Tumors Originate in Tumor Hotspots, a Tissue-Intrinsic Microenvironment
por: Tamori, Yoichiro, et al.
Publicado: (2016)

Gene mining of immune microenvironment in hepatocellular carcinoma
por: Xu, Zhi-Wei
Publicado: (2022)

Correction: Tissue Elasticity Regulated Tumor Gene Expression: Implication for Diagnostic Biomarkers of Primitive Neuroectodermal Tumor
por: Vu, Long T., et al.
Publicado: (2015)

Co-implanting orthotopic tissue creates stroma microenvironment enhancing growth and angiogenesis of multiple tumors
por: Borgstrom, Per, et al.
Publicado: (2013)

Identification of vital prognostic genes related to tumor microenvironment in pheochromocytoma and paraganglioma based on weighted gene co-expression network analysis
por: Chen, Chun-Xian, et al.
Publicado: (2021)

Tertiary lymphoid tissue: A gateway for T cells in the tumor microenvironment
por: Di Caro, Giuseppe, et al.
Publicado: (2014)

Molecular mechanisms of tissue inhibitor of metalloproteinase 2 in the tumor microenvironment
por: Remillard, Taylor C, et al.
Publicado: (2014)

3D Bioprinting of Model Tissues That Mimic the Tumor Microenvironment
por: Bojin, Florina, et al.
Publicado: (2021)

TGF-β Signaling: From Tissue Fibrosis to Tumor Microenvironment
por: Chung, Jeff Yat-Fai, et al.
Publicado: (2021)

The effect of tissue composition on gene co-expression
por: Zhang, Yun, et al.
Publicado: (2019)

Gene co-expression networks contributing to the expression of compensatory growth in metabolically active tissues in cattle
por: Keogh, Kate, et al.
Publicado: (2019)

Mining TCGA Database for Tumor Microenvironment-Related Genes of Prognostic Value in Hepatocellular Carcinoma
por: Deng, Zhenfeng, et al.
Publicado: (2019)

Partial Oxygen Pressure Affects the Expression of Prognostic Biomarkers HIF-1 Alpha, Ki67, and CK20 in the Microenvironment of Colorectal Cancer Tissue
por: Zhang, Lirong, et al.
Publicado: (2016)

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans
por: Chikina, Maria D., et al.
Publicado: (2009)

MiningABs: mining associated biomarkers across multi-connected gene expression datasets
por: Cheng, Chun-Pei, et al.
Publicado: (2014)

Tissue Compartment Analysis for Biomarker Discovery by Gene Expression Profiling
por: Disset, Antoine, et al.
Publicado: (2009)

Author Correction: Single-nuclei and bulk-tissue gene-expression analysis of pheochromocytoma and paraganglioma links disease subtypes with tumor microenvironment
por: Zethoven, Magnus, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_b304t630tv1lk59eteue8vbf9j