Cargando…

Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies

Electron paramagnetic resonance (EPR) and online UV–visible absorption microspectrophotometry with X-ray crystallography have been used in a complementary manner to follow X-ray-induced disulfide-bond cleavage. Online UV–visible spectroscopy showed that upon X-irradiation, disulfide radicalization a...

Descripción completa

Detalles Bibliográficos
Autores principales: Sutton, Kristin A., Black, Paul J., Mercer, Kermit R., Garman, Elspeth F., Owen, Robin L., Snell, Edward H., Bernhard, William A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852651/
https://www.ncbi.nlm.nih.gov/pubmed/24311579
http://dx.doi.org/10.1107/S0907444913022117
_version_ 1782478701680656384
author Sutton, Kristin A.
Black, Paul J.
Mercer, Kermit R.
Garman, Elspeth F.
Owen, Robin L.
Snell, Edward H.
Bernhard, William A.
author_facet Sutton, Kristin A.
Black, Paul J.
Mercer, Kermit R.
Garman, Elspeth F.
Owen, Robin L.
Snell, Edward H.
Bernhard, William A.
author_sort Sutton, Kristin A.
collection PubMed
description Electron paramagnetic resonance (EPR) and online UV–visible absorption microspectrophotometry with X-ray crystallography have been used in a complementary manner to follow X-ray-induced disulfide-bond cleavage. Online UV–visible spectroscopy showed that upon X-irradiation, disulfide radicalization appeared to saturate at an absorbed dose of approximately 0.5–0.8 MGy, in contrast to the saturating dose of ∼0.2 MGy observed using EPR at much lower dose rates. The observations suggest that a multi-track model involving product formation owing to the interaction of two separate tracks is a valid model for radiation damage in protein crystals. The saturation levels are remarkably consistent given the widely different experimental parameters and the range of total absorbed doses studied. The results indicate that even at the lowest doses used for structural investigations disulfide bonds are already radicalized. Multi-track considerations offer the first step in a comprehensive model of radiation damage that could potentially lead to a combined computational and experimental approach to identifying when damage is likely to be present, to quantitate it and to provide the ability to recover the native unperturbed structure.
format Online
Article
Text
id pubmed-3852651
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-38526512013-12-12 Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies Sutton, Kristin A. Black, Paul J. Mercer, Kermit R. Garman, Elspeth F. Owen, Robin L. Snell, Edward H. Bernhard, William A. Acta Crystallogr D Biol Crystallogr Research Papers Electron paramagnetic resonance (EPR) and online UV–visible absorption microspectrophotometry with X-ray crystallography have been used in a complementary manner to follow X-ray-induced disulfide-bond cleavage. Online UV–visible spectroscopy showed that upon X-irradiation, disulfide radicalization appeared to saturate at an absorbed dose of approximately 0.5–0.8 MGy, in contrast to the saturating dose of ∼0.2 MGy observed using EPR at much lower dose rates. The observations suggest that a multi-track model involving product formation owing to the interaction of two separate tracks is a valid model for radiation damage in protein crystals. The saturation levels are remarkably consistent given the widely different experimental parameters and the range of total absorbed doses studied. The results indicate that even at the lowest doses used for structural investigations disulfide bonds are already radicalized. Multi-track considerations offer the first step in a comprehensive model of radiation damage that could potentially lead to a combined computational and experimental approach to identifying when damage is likely to be present, to quantitate it and to provide the ability to recover the native unperturbed structure. International Union of Crystallography 2013-11-19 /pmc/articles/PMC3852651/ /pubmed/24311579 http://dx.doi.org/10.1107/S0907444913022117 Text en © Sutton, Black et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Sutton, Kristin A.
Black, Paul J.
Mercer, Kermit R.
Garman, Elspeth F.
Owen, Robin L.
Snell, Edward H.
Bernhard, William A.
Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title_full Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title_fullStr Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title_full_unstemmed Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title_short Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
title_sort insights into the mechanism of x-ray-induced disulfide-bond cleavage in lysozyme crystals based on epr, optical absorption and x-ray diffraction studies
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852651/
https://www.ncbi.nlm.nih.gov/pubmed/24311579
http://dx.doi.org/10.1107/S0907444913022117
work_keys_str_mv AT suttonkristina insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT blackpaulj insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT mercerkermitr insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT garmanelspethf insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT owenrobinl insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT snelledwardh insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies
AT bernhardwilliama insightsintothemechanismofxrayinduceddisulfidebondcleavageinlysozymecrystalsbasedonepropticalabsorptionandxraydiffractionstudies