Cargando…
Protein energy landscapes determined by five-dimensional crystallography
Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 1...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852658/ https://www.ncbi.nlm.nih.gov/pubmed/24311594 http://dx.doi.org/10.1107/S0907444913025997 |
_version_ | 1782478702992424960 |
---|---|
author | Schmidt, Marius Srajer, Vukica Henning, Robert Ihee, Hyotcherl Purwar, Namrta Tenboer, Jason Tripathi, Shailesh |
author_facet | Schmidt, Marius Srajer, Vukica Henning, Robert Ihee, Hyotcherl Purwar, Namrta Tenboer, Jason Tripathi, Shailesh |
author_sort | Schmidt, Marius |
collection | PubMed |
description | Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 101, 1569–1581; Schmidt et al. (2005 ▶), Methods Mol. Biol. 305, 115–154; Schmidt (2008 ▶), Ultrashort Laser Pulses in Medicine and Biology] because both can be determined from the same set of X-ray data. Here, it is demonstrated how barriers of activation can be determined solely from five-dimensional crystallography, where in addition to space and time, temperature is a variable as well [Schmidt et al. (2010 ▶), Acta Cryst. A66, 198–206]. Directly linking molecular structures with barriers of activation between them allows insight into the structural nature of the barrier to be gained. Comprehensive time series of crystallographic data at 14 different temperature settings were analyzed and the entropy and enthalpy contributions to the barriers of activation were determined. One hundred years after the discovery of X-ray scattering, these results advance X-ray structure determination to a new frontier: the determination of energy landscapes. |
format | Online Article Text |
id | pubmed-3852658 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-38526582013-12-12 Protein energy landscapes determined by five-dimensional crystallography Schmidt, Marius Srajer, Vukica Henning, Robert Ihee, Hyotcherl Purwar, Namrta Tenboer, Jason Tripathi, Shailesh Acta Crystallogr D Biol Crystallogr Research Papers Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 101, 1569–1581; Schmidt et al. (2005 ▶), Methods Mol. Biol. 305, 115–154; Schmidt (2008 ▶), Ultrashort Laser Pulses in Medicine and Biology] because both can be determined from the same set of X-ray data. Here, it is demonstrated how barriers of activation can be determined solely from five-dimensional crystallography, where in addition to space and time, temperature is a variable as well [Schmidt et al. (2010 ▶), Acta Cryst. A66, 198–206]. Directly linking molecular structures with barriers of activation between them allows insight into the structural nature of the barrier to be gained. Comprehensive time series of crystallographic data at 14 different temperature settings were analyzed and the entropy and enthalpy contributions to the barriers of activation were determined. One hundred years after the discovery of X-ray scattering, these results advance X-ray structure determination to a new frontier: the determination of energy landscapes. International Union of Crystallography 2013-12-01 2013-11-19 /pmc/articles/PMC3852658/ /pubmed/24311594 http://dx.doi.org/10.1107/S0907444913025997 Text en © Schmidt et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Schmidt, Marius Srajer, Vukica Henning, Robert Ihee, Hyotcherl Purwar, Namrta Tenboer, Jason Tripathi, Shailesh Protein energy landscapes determined by five-dimensional crystallography |
title | Protein energy landscapes determined by five-dimensional crystallography |
title_full | Protein energy landscapes determined by five-dimensional crystallography |
title_fullStr | Protein energy landscapes determined by five-dimensional crystallography |
title_full_unstemmed | Protein energy landscapes determined by five-dimensional crystallography |
title_short | Protein energy landscapes determined by five-dimensional crystallography |
title_sort | protein energy landscapes determined by five-dimensional crystallography |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852658/ https://www.ncbi.nlm.nih.gov/pubmed/24311594 http://dx.doi.org/10.1107/S0907444913025997 |
work_keys_str_mv | AT schmidtmarius proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT srajervukica proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT henningrobert proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT iheehyotcherl proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT purwarnamrta proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT tenboerjason proteinenergylandscapesdeterminedbyfivedimensionalcrystallography AT tripathishailesh proteinenergylandscapesdeterminedbyfivedimensionalcrystallography |