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Protein energy landscapes determined by five-dimensional crystallography

Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 1...

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Autores principales: Schmidt, Marius, Srajer, Vukica, Henning, Robert, Ihee, Hyotcherl, Purwar, Namrta, Tenboer, Jason, Tripathi, Shailesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852658/
https://www.ncbi.nlm.nih.gov/pubmed/24311594
http://dx.doi.org/10.1107/S0907444913025997
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author Schmidt, Marius
Srajer, Vukica
Henning, Robert
Ihee, Hyotcherl
Purwar, Namrta
Tenboer, Jason
Tripathi, Shailesh
author_facet Schmidt, Marius
Srajer, Vukica
Henning, Robert
Ihee, Hyotcherl
Purwar, Namrta
Tenboer, Jason
Tripathi, Shailesh
author_sort Schmidt, Marius
collection PubMed
description Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 101, 1569–1581; Schmidt et al. (2005 ▶), Methods Mol. Biol. 305, 115–154; Schmidt (2008 ▶), Ultrashort Laser Pulses in Medicine and Biology] because both can be determined from the same set of X-ray data. Here, it is demonstrated how barriers of activation can be determined solely from five-dimensional crystallo­graphy, where in addition to space and time, temperature is a variable as well [Schmidt et al. (2010 ▶), Acta Cryst. A66, 198–206]. Directly linking molecular structures with barriers of activation between them allows insight into the structural nature of the barrier to be gained. Comprehensive time series of crystallo­graphic data at 14 different temperature settings were analyzed and the entropy and enthalpy contributions to the barriers of activation were determined. One hundred years after the discovery of X-ray scattering, these results advance X-ray structure determination to a new frontier: the determination of energy landscapes.
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spelling pubmed-38526582013-12-12 Protein energy landscapes determined by five-dimensional crystallography Schmidt, Marius Srajer, Vukica Henning, Robert Ihee, Hyotcherl Purwar, Namrta Tenboer, Jason Tripathi, Shailesh Acta Crystallogr D Biol Crystallogr Research Papers Free-energy landscapes decisively determine the progress of enzymatically catalyzed reactions [Cornish-Bowden (2012 ▶), Fundamentals of Enzyme Kinetics, 4th ed.]. Time-resolved macromolecular crystallography unifies transient-state kinetics with structure determination [Moffat (2001 ▶), Chem. Rev. 101, 1569–1581; Schmidt et al. (2005 ▶), Methods Mol. Biol. 305, 115–154; Schmidt (2008 ▶), Ultrashort Laser Pulses in Medicine and Biology] because both can be determined from the same set of X-ray data. Here, it is demonstrated how barriers of activation can be determined solely from five-dimensional crystallo­graphy, where in addition to space and time, temperature is a variable as well [Schmidt et al. (2010 ▶), Acta Cryst. A66, 198–206]. Directly linking molecular structures with barriers of activation between them allows insight into the structural nature of the barrier to be gained. Comprehensive time series of crystallo­graphic data at 14 different temperature settings were analyzed and the entropy and enthalpy contributions to the barriers of activation were determined. One hundred years after the discovery of X-ray scattering, these results advance X-ray structure determination to a new frontier: the determination of energy landscapes. International Union of Crystallography 2013-12-01 2013-11-19 /pmc/articles/PMC3852658/ /pubmed/24311594 http://dx.doi.org/10.1107/S0907444913025997 Text en © Schmidt et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Schmidt, Marius
Srajer, Vukica
Henning, Robert
Ihee, Hyotcherl
Purwar, Namrta
Tenboer, Jason
Tripathi, Shailesh
Protein energy landscapes determined by five-dimensional crystallography
title Protein energy landscapes determined by five-dimensional crystallography
title_full Protein energy landscapes determined by five-dimensional crystallography
title_fullStr Protein energy landscapes determined by five-dimensional crystallography
title_full_unstemmed Protein energy landscapes determined by five-dimensional crystallography
title_short Protein energy landscapes determined by five-dimensional crystallography
title_sort protein energy landscapes determined by five-dimensional crystallography
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852658/
https://www.ncbi.nlm.nih.gov/pubmed/24311594
http://dx.doi.org/10.1107/S0907444913025997
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