Cargando…

The role of reporting standards for metabolite annotation and identification in metabolomic studies

The application of reporting standards in metabolomics allow data from different laboratories to be shared, integrated and interpreted. Although minimum reporting standards related to metabolite identification were published in 2007, it is clear that significant efforts are required to ensure their...

Descripción completa

Detalles Bibliográficos
Autores principales: Salek, Reza M, Steinbeck, Christoph, Viant, Mark R, Goodacre, Royston, Dunn, Warwick B
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853013/
https://www.ncbi.nlm.nih.gov/pubmed/24131531
http://dx.doi.org/10.1186/2047-217X-2-13
_version_ 1782478764335169536
author Salek, Reza M
Steinbeck, Christoph
Viant, Mark R
Goodacre, Royston
Dunn, Warwick B
author_facet Salek, Reza M
Steinbeck, Christoph
Viant, Mark R
Goodacre, Royston
Dunn, Warwick B
author_sort Salek, Reza M
collection PubMed
description The application of reporting standards in metabolomics allow data from different laboratories to be shared, integrated and interpreted. Although minimum reporting standards related to metabolite identification were published in 2007, it is clear that significant efforts are required to ensure their continuous update and appropriate use by the metabolomics community. These include their use in metabolomics data submission (e.g., MetaboLights) and as a requirement for publication in peer-reviewed journals (e.g., Metabolomics). The Data Standards and Metabolite Identification Task Groups of the international Metabolomics Society are actively working to develop and promote these standards and educate the community on their use.
format Online
Article
Text
id pubmed-3853013
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-38530132013-12-16 The role of reporting standards for metabolite annotation and identification in metabolomic studies Salek, Reza M Steinbeck, Christoph Viant, Mark R Goodacre, Royston Dunn, Warwick B Gigascience Commentary The application of reporting standards in metabolomics allow data from different laboratories to be shared, integrated and interpreted. Although minimum reporting standards related to metabolite identification were published in 2007, it is clear that significant efforts are required to ensure their continuous update and appropriate use by the metabolomics community. These include their use in metabolomics data submission (e.g., MetaboLights) and as a requirement for publication in peer-reviewed journals (e.g., Metabolomics). The Data Standards and Metabolite Identification Task Groups of the international Metabolomics Society are actively working to develop and promote these standards and educate the community on their use. BioMed Central 2013-10-16 /pmc/articles/PMC3853013/ /pubmed/24131531 http://dx.doi.org/10.1186/2047-217X-2-13 Text en Copyright © 2013 Salek et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Salek, Reza M
Steinbeck, Christoph
Viant, Mark R
Goodacre, Royston
Dunn, Warwick B
The role of reporting standards for metabolite annotation and identification in metabolomic studies
title The role of reporting standards for metabolite annotation and identification in metabolomic studies
title_full The role of reporting standards for metabolite annotation and identification in metabolomic studies
title_fullStr The role of reporting standards for metabolite annotation and identification in metabolomic studies
title_full_unstemmed The role of reporting standards for metabolite annotation and identification in metabolomic studies
title_short The role of reporting standards for metabolite annotation and identification in metabolomic studies
title_sort role of reporting standards for metabolite annotation and identification in metabolomic studies
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853013/
https://www.ncbi.nlm.nih.gov/pubmed/24131531
http://dx.doi.org/10.1186/2047-217X-2-13
work_keys_str_mv AT salekrezam theroleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT steinbeckchristoph theroleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT viantmarkr theroleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT goodacreroyston theroleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT dunnwarwickb theroleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT salekrezam roleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT steinbeckchristoph roleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT viantmarkr roleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT goodacreroyston roleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies
AT dunnwarwickb roleofreportingstandardsformetaboliteannotationandidentificationinmetabolomicstudies