Cargando…

A short tutorial in analyzing NGS data of cancer genomes for somatic mutation calling

Detalles Bibliográficos
Autores principales:	Vuong, Huy, Zhao, Zhongming
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Meeting Abstract
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853084/ http://dx.doi.org/10.1186/1471-2105-14-S17-A15

Ejemplares similares

NGS-Logistics: data infrastructure for efficient analysis of NGS sequence variants across multiple centers
por: Ardeshirdavani, Amin, et al.
Publicado: (2015)

Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach
por: Vuong, Huy, et al.
Publicado: (2014)

COSMOS: cloud enabled NGS analysis
por: Souilmi, Yassine, et al.
Publicado: (2015)

Pitfalls and perspectives in cancer genomes NGS studies: implications for predictive, preventive and personalized medicine (PPPM)
por: Rovigatti, Ugo
Publicado: (2014)

PW02-034 - NLRP3 mosaicism detection in CAPS using NGS
por: Stoffels, M, et al.
Publicado: (2013)

Resistance to CD95-mediated apoptosis in breast cancer is not due to somatic mutation of the CD95 gene
por: Moers, C, et al.
Publicado: (2001)

mDAG: a web-based tool for analyzing microarray data with multiple treatments
por: Phan, Vinhthuy T, et al.
Publicado: (2011)

Cas-analyzer: an online tool for assessing genome editing results using NGS data
por: Park, Jeongbin, et al.
Publicado: (2017)

Development of Bioinformatics Pipeline for Analyzing Clinical Pediatric NGS Data
por: Crowgey, Erin L., et al.
Publicado: (2015)

On call physiotherapy: the impact of outreach services
por: Lees, LJ, et al.
Publicado: (2003)

Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques
por: Döring, Matthias, et al.
Publicado: (2015)

Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers
por: Wang, Qingguo, et al.
Publicado: (2013)

BRCA1/2 NGS Somatic Testing in Clinical Practice: A Short Report
por: Pepe, Francesco, et al.
Publicado: (2021)

The general problem of increased somatic comorbidity in bipolar patients
por: Bobes, Julio
Publicado: (2010)

Differential coexpression network modules observed in human hepatocellular carcinoma progression
por: Yu, Hui, et al.
Publicado: (2013)

Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach
por: Zheng, Siyuan, et al.
Publicado: (2011)

amplimap: a versatile tool to process and analyze targeted NGS data
por: Koelling, Nils, et al.
Publicado: (2020)

amplimap: a versatile tool to process and analyze targeted NGS data
por: Koelling, Nils, et al.
Publicado: (2019)

NGS technologies for analyzing germplasm diversity in genebanks*
por: Kilian, Benjamin, et al.
Publicado: (2012)

The somatic genetic architecture of human cancer: heterogeneity and the challenges for translational medicine
por: Futreal, Andy
Publicado: (2012)

Network analysis of gene fusions in human cancer
por: Harrell, Morgan, et al.
Publicado: (2013)

FiNGS: high quality somatic mutations using filters for next generation sequencing
por: Wardell, Christopher Paul, et al.
Publicado: (2021)

Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer
por: Mitra, Ramkrishna, et al.
Publicado: (2013)

Drug addictions and sexual violence in childhood and adolescence: analyzing life stories
por: Leão Doescher, Andréa Marques, et al.
Publicado: (2013)

Utilizing Roche Cedex Bio analyzer for in process monitoring in biotech production
por: Druhmann, Dörthe, et al.
Publicado: (2011)

Germline BRCA2 and somatic P53 alterations in male breast cancer
por: Csokay, B, et al.
Publicado: (2000)

Malignant hyperthermia emergency consultation: preliminary results from 'hotline' calls
por: Guimarães, HP, et al.
Publicado: (2001)

Weekly simulation for an on call helicopter emergency medical crew: feasible or impossible?
por: Bredmose, Per P, et al.
Publicado: (2015)

Comparison of somatic mutation calling methods in amplicon and whole exome sequence data
por: Xu, Huilei, et al.
Publicado: (2014)

Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data
por: Schilbert, Hanna Marie, et al.
Publicado: (2020)

TUTORIAL-STYLE EDUCATION FOR UNDERGRADUATES IN AGING
por: Deason, Karley, et al.
Publicado: (2022)

Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples
por: Ji, Shuangxi, et al.
Publicado: (2023)

Genome regulation in the (so-called) post-genomic era
por: Gelfand, Mikhail S
Publicado: (2000)

Somatic Point Mutation Calling in Low Cellularity Tumors
por: Kassahn, Karin S., et al.
Publicado: (2013)

Combining calls from multiple somatic mutation-callers
por: Kim, Su Yeon, et al.
Publicado: (2014)

Understanding the Basics of NGS: From Mechanism to Variant Calling
por: Muzzey, Dale, et al.
Publicado: (2015)

Color call improvement in next generation sequencing using multi-class support vector machines
por: Viswanath, Shruthi, et al.
Publicado: (2012)

DIANA-mAP: Analyzing miRNA from Raw NGS Data to Quantification
por: Alexiou, Athanasios, et al.
Publicado: (2020)

varAmpliCNV: analyzing variance of amplicons to detect CNVs in targeted NGS data
por: Kumar, Ajay Anand, et al.
Publicado: (2022)

Assessment of a handy-type blood gas analyzer for measuring intramucosal pH (pHi)
por: Dohgomori, H, et al.
Publicado: (2000)

Cannot write session to /tmp/vufind_sessions/sess_rk7fuun5q7vj2tainc883d585b