Cargando…

An Automated Blur Detection Method for Histological Whole Slide Imaging

Whole slide scanners are novel devices that enable high-resolution imaging of an entire histological slide. Furthermore, the imaging is achieved in only a few minutes, which enables image rendering of large-scale studies involving multiple immunohistochemistry biomarkers. Although whole slide imagin...

Descripción completa

Detalles Bibliográficos
Autores principales: Moles Lopez, Xavier, D'Andrea, Etienne, Barbot, Paul, Bridoux, Anne-Sophie, Rorive, Sandrine, Salmon, Isabelle, Debeir, Olivier, Decaestecker, Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3862630/
https://www.ncbi.nlm.nih.gov/pubmed/24349343
http://dx.doi.org/10.1371/journal.pone.0082710
_version_ 1782295765036564480
author Moles Lopez, Xavier
D'Andrea, Etienne
Barbot, Paul
Bridoux, Anne-Sophie
Rorive, Sandrine
Salmon, Isabelle
Debeir, Olivier
Decaestecker, Christine
author_facet Moles Lopez, Xavier
D'Andrea, Etienne
Barbot, Paul
Bridoux, Anne-Sophie
Rorive, Sandrine
Salmon, Isabelle
Debeir, Olivier
Decaestecker, Christine
author_sort Moles Lopez, Xavier
collection PubMed
description Whole slide scanners are novel devices that enable high-resolution imaging of an entire histological slide. Furthermore, the imaging is achieved in only a few minutes, which enables image rendering of large-scale studies involving multiple immunohistochemistry biomarkers. Although whole slide imaging has improved considerably, locally poor focusing causes blurred regions of the image. These artifacts may strongly affect the quality of subsequent analyses, making a slide review process mandatory. This tedious and time-consuming task requires the scanner operator to carefully assess the virtual slide and to manually select new focus points. We propose a statistical learning method that provides early image quality feedback and automatically identifies regions of the image that require additional focus points.
format Online
Article
Text
id pubmed-3862630
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-38626302013-12-17 An Automated Blur Detection Method for Histological Whole Slide Imaging Moles Lopez, Xavier D'Andrea, Etienne Barbot, Paul Bridoux, Anne-Sophie Rorive, Sandrine Salmon, Isabelle Debeir, Olivier Decaestecker, Christine PLoS One Research Article Whole slide scanners are novel devices that enable high-resolution imaging of an entire histological slide. Furthermore, the imaging is achieved in only a few minutes, which enables image rendering of large-scale studies involving multiple immunohistochemistry biomarkers. Although whole slide imaging has improved considerably, locally poor focusing causes blurred regions of the image. These artifacts may strongly affect the quality of subsequent analyses, making a slide review process mandatory. This tedious and time-consuming task requires the scanner operator to carefully assess the virtual slide and to manually select new focus points. We propose a statistical learning method that provides early image quality feedback and automatically identifies regions of the image that require additional focus points. Public Library of Science 2013-12-13 /pmc/articles/PMC3862630/ /pubmed/24349343 http://dx.doi.org/10.1371/journal.pone.0082710 Text en © 2013 Moles Lopez et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Moles Lopez, Xavier
D'Andrea, Etienne
Barbot, Paul
Bridoux, Anne-Sophie
Rorive, Sandrine
Salmon, Isabelle
Debeir, Olivier
Decaestecker, Christine
An Automated Blur Detection Method for Histological Whole Slide Imaging
title An Automated Blur Detection Method for Histological Whole Slide Imaging
title_full An Automated Blur Detection Method for Histological Whole Slide Imaging
title_fullStr An Automated Blur Detection Method for Histological Whole Slide Imaging
title_full_unstemmed An Automated Blur Detection Method for Histological Whole Slide Imaging
title_short An Automated Blur Detection Method for Histological Whole Slide Imaging
title_sort automated blur detection method for histological whole slide imaging
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3862630/
https://www.ncbi.nlm.nih.gov/pubmed/24349343
http://dx.doi.org/10.1371/journal.pone.0082710
work_keys_str_mv AT moleslopezxavier anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT dandreaetienne anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT barbotpaul anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT bridouxannesophie anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT rorivesandrine anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT salmonisabelle anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT debeirolivier anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT decaesteckerchristine anautomatedblurdetectionmethodforhistologicalwholeslideimaging
AT moleslopezxavier automatedblurdetectionmethodforhistologicalwholeslideimaging
AT dandreaetienne automatedblurdetectionmethodforhistologicalwholeslideimaging
AT barbotpaul automatedblurdetectionmethodforhistologicalwholeslideimaging
AT bridouxannesophie automatedblurdetectionmethodforhistologicalwholeslideimaging
AT rorivesandrine automatedblurdetectionmethodforhistologicalwholeslideimaging
AT salmonisabelle automatedblurdetectionmethodforhistologicalwholeslideimaging
AT debeirolivier automatedblurdetectionmethodforhistologicalwholeslideimaging
AT decaesteckerchristine automatedblurdetectionmethodforhistologicalwholeslideimaging