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Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition

Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation D...

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Autores principales: Alva, Alicia, Aquino, Fredy, Gilman, Robert H., Olivares, Carlos, Requena, David, Gutiérrez, Andrés H., Caviedes, Luz, Coronel, Jorge, Larson, Sandra, Sheen, Patricia, Moore, David A. J., Zimic, Mirko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865090/
https://www.ncbi.nlm.nih.gov/pubmed/24358227
http://dx.doi.org/10.1371/journal.pone.0082809
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author Alva, Alicia
Aquino, Fredy
Gilman, Robert H.
Olivares, Carlos
Requena, David
Gutiérrez, Andrés H.
Caviedes, Luz
Coronel, Jorge
Larson, Sandra
Sheen, Patricia
Moore, David A. J.
Zimic, Mirko
author_facet Alva, Alicia
Aquino, Fredy
Gilman, Robert H.
Olivares, Carlos
Requena, David
Gutiérrez, Andrés H.
Caviedes, Luz
Coronel, Jorge
Larson, Sandra
Sheen, Patricia
Moore, David A. J.
Zimic, Mirko
author_sort Alva, Alicia
collection PubMed
description Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation Drug Susceptibility (MODS) assay uses visual recognition of cording patterns from Mycobacterium tuberculosis (MTB) to diagnose tuberculosis infection and drug susceptibility directly from a sputum sample in 7–10 days with a low cost. An important limitation that laboratories in the developing world face in MODS implementation is the presence of permanent technical staff with expertise in reading MODS. We developed a pattern recognition algorithm to automatically interpret MODS results from digital images. The algorithm using image processing, feature extraction and pattern recognition determined geometrical and illumination features used in an object-model and a photo-model to classify TB-positive images. 765 MODS digital photos were processed. The single-object model identified MTB (96.9% sensitivity and 96.3% specificity) and was able to discriminate non-tuberculous mycobacteria with a high specificity (97.1% M. avium, 99.1% M. chelonae, and 93.8% M. kansasii). The photo model identified TB-positive samples with 99.1% sensitivity and 99.7% specificity. This algorithm is a valuable tool that will enable automatic remote diagnosis using Internet or cellphone telephony. The use of this algorithm and its further implementation in a telediagnostics platform will contribute to both faster TB detection and MDR TB determination leading to an earlier initiation of appropriate treatment.
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spelling pubmed-38650902013-12-19 Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition Alva, Alicia Aquino, Fredy Gilman, Robert H. Olivares, Carlos Requena, David Gutiérrez, Andrés H. Caviedes, Luz Coronel, Jorge Larson, Sandra Sheen, Patricia Moore, David A. J. Zimic, Mirko PLoS One Research Article Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation Drug Susceptibility (MODS) assay uses visual recognition of cording patterns from Mycobacterium tuberculosis (MTB) to diagnose tuberculosis infection and drug susceptibility directly from a sputum sample in 7–10 days with a low cost. An important limitation that laboratories in the developing world face in MODS implementation is the presence of permanent technical staff with expertise in reading MODS. We developed a pattern recognition algorithm to automatically interpret MODS results from digital images. The algorithm using image processing, feature extraction and pattern recognition determined geometrical and illumination features used in an object-model and a photo-model to classify TB-positive images. 765 MODS digital photos were processed. The single-object model identified MTB (96.9% sensitivity and 96.3% specificity) and was able to discriminate non-tuberculous mycobacteria with a high specificity (97.1% M. avium, 99.1% M. chelonae, and 93.8% M. kansasii). The photo model identified TB-positive samples with 99.1% sensitivity and 99.7% specificity. This algorithm is a valuable tool that will enable automatic remote diagnosis using Internet or cellphone telephony. The use of this algorithm and its further implementation in a telediagnostics platform will contribute to both faster TB detection and MDR TB determination leading to an earlier initiation of appropriate treatment. Public Library of Science 2013-12-16 /pmc/articles/PMC3865090/ /pubmed/24358227 http://dx.doi.org/10.1371/journal.pone.0082809 Text en © 2013 Alva et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Alva, Alicia
Aquino, Fredy
Gilman, Robert H.
Olivares, Carlos
Requena, David
Gutiérrez, Andrés H.
Caviedes, Luz
Coronel, Jorge
Larson, Sandra
Sheen, Patricia
Moore, David A. J.
Zimic, Mirko
Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title_full Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title_fullStr Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title_full_unstemmed Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title_short Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
title_sort morphological characterization of mycobacterium tuberculosis in a mods culture for an automatic diagnostics through pattern recognition
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865090/
https://www.ncbi.nlm.nih.gov/pubmed/24358227
http://dx.doi.org/10.1371/journal.pone.0082809
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