Cargando…
Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition
Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation D...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865090/ https://www.ncbi.nlm.nih.gov/pubmed/24358227 http://dx.doi.org/10.1371/journal.pone.0082809 |
_version_ | 1782295986429755392 |
---|---|
author | Alva, Alicia Aquino, Fredy Gilman, Robert H. Olivares, Carlos Requena, David Gutiérrez, Andrés H. Caviedes, Luz Coronel, Jorge Larson, Sandra Sheen, Patricia Moore, David A. J. Zimic, Mirko |
author_facet | Alva, Alicia Aquino, Fredy Gilman, Robert H. Olivares, Carlos Requena, David Gutiérrez, Andrés H. Caviedes, Luz Coronel, Jorge Larson, Sandra Sheen, Patricia Moore, David A. J. Zimic, Mirko |
author_sort | Alva, Alicia |
collection | PubMed |
description | Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation Drug Susceptibility (MODS) assay uses visual recognition of cording patterns from Mycobacterium tuberculosis (MTB) to diagnose tuberculosis infection and drug susceptibility directly from a sputum sample in 7–10 days with a low cost. An important limitation that laboratories in the developing world face in MODS implementation is the presence of permanent technical staff with expertise in reading MODS. We developed a pattern recognition algorithm to automatically interpret MODS results from digital images. The algorithm using image processing, feature extraction and pattern recognition determined geometrical and illumination features used in an object-model and a photo-model to classify TB-positive images. 765 MODS digital photos were processed. The single-object model identified MTB (96.9% sensitivity and 96.3% specificity) and was able to discriminate non-tuberculous mycobacteria with a high specificity (97.1% M. avium, 99.1% M. chelonae, and 93.8% M. kansasii). The photo model identified TB-positive samples with 99.1% sensitivity and 99.7% specificity. This algorithm is a valuable tool that will enable automatic remote diagnosis using Internet or cellphone telephony. The use of this algorithm and its further implementation in a telediagnostics platform will contribute to both faster TB detection and MDR TB determination leading to an earlier initiation of appropriate treatment. |
format | Online Article Text |
id | pubmed-3865090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-38650902013-12-19 Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition Alva, Alicia Aquino, Fredy Gilman, Robert H. Olivares, Carlos Requena, David Gutiérrez, Andrés H. Caviedes, Luz Coronel, Jorge Larson, Sandra Sheen, Patricia Moore, David A. J. Zimic, Mirko PLoS One Research Article Tuberculosis control efforts are hampered by a mismatch in diagnostic technology: modern optimal diagnostic tests are least available in poor areas where they are needed most. Lack of adequate early diagnostics and MDR detection is a critical problem in control efforts. The Microscopic Observation Drug Susceptibility (MODS) assay uses visual recognition of cording patterns from Mycobacterium tuberculosis (MTB) to diagnose tuberculosis infection and drug susceptibility directly from a sputum sample in 7–10 days with a low cost. An important limitation that laboratories in the developing world face in MODS implementation is the presence of permanent technical staff with expertise in reading MODS. We developed a pattern recognition algorithm to automatically interpret MODS results from digital images. The algorithm using image processing, feature extraction and pattern recognition determined geometrical and illumination features used in an object-model and a photo-model to classify TB-positive images. 765 MODS digital photos were processed. The single-object model identified MTB (96.9% sensitivity and 96.3% specificity) and was able to discriminate non-tuberculous mycobacteria with a high specificity (97.1% M. avium, 99.1% M. chelonae, and 93.8% M. kansasii). The photo model identified TB-positive samples with 99.1% sensitivity and 99.7% specificity. This algorithm is a valuable tool that will enable automatic remote diagnosis using Internet or cellphone telephony. The use of this algorithm and its further implementation in a telediagnostics platform will contribute to both faster TB detection and MDR TB determination leading to an earlier initiation of appropriate treatment. Public Library of Science 2013-12-16 /pmc/articles/PMC3865090/ /pubmed/24358227 http://dx.doi.org/10.1371/journal.pone.0082809 Text en © 2013 Alva et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Alva, Alicia Aquino, Fredy Gilman, Robert H. Olivares, Carlos Requena, David Gutiérrez, Andrés H. Caviedes, Luz Coronel, Jorge Larson, Sandra Sheen, Patricia Moore, David A. J. Zimic, Mirko Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title | Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title_full | Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title_fullStr | Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title_full_unstemmed | Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title_short | Morphological Characterization of Mycobacterium tuberculosis in a MODS Culture for an Automatic Diagnostics through Pattern Recognition |
title_sort | morphological characterization of mycobacterium tuberculosis in a mods culture for an automatic diagnostics through pattern recognition |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865090/ https://www.ncbi.nlm.nih.gov/pubmed/24358227 http://dx.doi.org/10.1371/journal.pone.0082809 |
work_keys_str_mv | AT alvaalicia morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT aquinofredy morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT gilmanroberth morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT olivarescarlos morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT requenadavid morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT gutierrezandresh morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT caviedesluz morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT coroneljorge morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT larsonsandra morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT sheenpatricia morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT mooredavidaj morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition AT zimicmirko morphologicalcharacterizationofmycobacteriumtuberculosisinamodscultureforanautomaticdiagnosticsthroughpatternrecognition |