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Nanosecond Time Scale Motions in Proteins Revealed by High-Resolution NMR Relaxometry
[Image: see text] Understanding the molecular determinants underlying protein function requires the characterization of both structure and dynamics at atomic resolution. Nuclear relaxation rates allow a precise characterization of protein dynamics at the Larmor frequencies of spins. This usually lim...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865798/ https://www.ncbi.nlm.nih.gov/pubmed/24228712 http://dx.doi.org/10.1021/ja409820g |
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author | Charlier, Cyril Khan, Shahid Nawaz Marquardsen, Thorsten Pelupessy, Philippe Reiss, Volker Sakellariou, Dimitris Bodenhausen, Geoffrey Engelke, Frank Ferrage, Fabien |
author_facet | Charlier, Cyril Khan, Shahid Nawaz Marquardsen, Thorsten Pelupessy, Philippe Reiss, Volker Sakellariou, Dimitris Bodenhausen, Geoffrey Engelke, Frank Ferrage, Fabien |
author_sort | Charlier, Cyril |
collection | PubMed |
description | [Image: see text] Understanding the molecular determinants underlying protein function requires the characterization of both structure and dynamics at atomic resolution. Nuclear relaxation rates allow a precise characterization of protein dynamics at the Larmor frequencies of spins. This usually limits the sampling of motions to a narrow range of frequencies corresponding to high magnetic fields. At lower fields one cannot achieve sufficient sensitivity and resolution in NMR. Here, we use a fast shuttle device where the polarization builds up and the signals are detected at high field, while longitudinal relaxation takes place at low fields 0.5 < B(0) < 14.1 T. The sample is propelled over a distance up to 50 cm by a blowgun-like system in about 50 ms. The analysis of nitrogen-15 relaxation in the protein ubiquitin over such a wide range of magnetic fields offers unprecedented insights into molecular dynamics. Some key regions of the protein feature structural fluctuations on nanosecond time scales, which have so far been overlooked in high-field relaxation studies. Nanosecond motions in proteins may have been underestimated by traditional high-field approaches, and slower supra-τ(c) motions that have no effect on relaxation may have been overestimated. High-resolution relaxometry thus opens the way to a quantitative characterization of nanosecond motions in proteins. |
format | Online Article Text |
id | pubmed-3865798 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-38657982013-12-17 Nanosecond Time Scale Motions in Proteins Revealed by High-Resolution NMR Relaxometry Charlier, Cyril Khan, Shahid Nawaz Marquardsen, Thorsten Pelupessy, Philippe Reiss, Volker Sakellariou, Dimitris Bodenhausen, Geoffrey Engelke, Frank Ferrage, Fabien J Am Chem Soc [Image: see text] Understanding the molecular determinants underlying protein function requires the characterization of both structure and dynamics at atomic resolution. Nuclear relaxation rates allow a precise characterization of protein dynamics at the Larmor frequencies of spins. This usually limits the sampling of motions to a narrow range of frequencies corresponding to high magnetic fields. At lower fields one cannot achieve sufficient sensitivity and resolution in NMR. Here, we use a fast shuttle device where the polarization builds up and the signals are detected at high field, while longitudinal relaxation takes place at low fields 0.5 < B(0) < 14.1 T. The sample is propelled over a distance up to 50 cm by a blowgun-like system in about 50 ms. The analysis of nitrogen-15 relaxation in the protein ubiquitin over such a wide range of magnetic fields offers unprecedented insights into molecular dynamics. Some key regions of the protein feature structural fluctuations on nanosecond time scales, which have so far been overlooked in high-field relaxation studies. Nanosecond motions in proteins may have been underestimated by traditional high-field approaches, and slower supra-τ(c) motions that have no effect on relaxation may have been overestimated. High-resolution relaxometry thus opens the way to a quantitative characterization of nanosecond motions in proteins. American Chemical Society 2013-11-14 2013-12-11 /pmc/articles/PMC3865798/ /pubmed/24228712 http://dx.doi.org/10.1021/ja409820g Text en Copyright © 2013 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Charlier, Cyril Khan, Shahid Nawaz Marquardsen, Thorsten Pelupessy, Philippe Reiss, Volker Sakellariou, Dimitris Bodenhausen, Geoffrey Engelke, Frank Ferrage, Fabien Nanosecond Time Scale Motions in Proteins Revealed by High-Resolution NMR Relaxometry |
title | Nanosecond
Time Scale Motions in Proteins Revealed
by High-Resolution NMR Relaxometry |
title_full | Nanosecond
Time Scale Motions in Proteins Revealed
by High-Resolution NMR Relaxometry |
title_fullStr | Nanosecond
Time Scale Motions in Proteins Revealed
by High-Resolution NMR Relaxometry |
title_full_unstemmed | Nanosecond
Time Scale Motions in Proteins Revealed
by High-Resolution NMR Relaxometry |
title_short | Nanosecond
Time Scale Motions in Proteins Revealed
by High-Resolution NMR Relaxometry |
title_sort | nanosecond
time scale motions in proteins revealed
by high-resolution nmr relaxometry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865798/ https://www.ncbi.nlm.nih.gov/pubmed/24228712 http://dx.doi.org/10.1021/ja409820g |
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