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A poor man’s BLASTX—high-throughput metagenomic protein database search using PAUDA
Summary: In the context of metagenomics, we introduce a new approach to protein database search called PAUDA, which runs ∼10 000 times faster than BLASTX, while achieving about one-third of the assignment rate of reads to KEGG orthology groups, and producing gene and taxon abundance profiles that ar...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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Oxford University Press
2014
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3866550/ https://www.ncbi.nlm.nih.gov/pubmed/23658416 http://dx.doi.org/10.1093/bioinformatics/btt254 |