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Automatic protein structure solution from weak X-ray data

Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets f...

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Detalles Bibliográficos
Autores principales: Skubák, Pavol, Pannu, Navraj S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Pub. Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868232/
https://www.ncbi.nlm.nih.gov/pubmed/24231803
http://dx.doi.org/10.1038/ncomms3777
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author Skubák, Pavol
Pannu, Navraj S.
author_facet Skubák, Pavol
Pannu, Navraj S.
author_sort Skubák, Pavol
collection PubMed
description Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets from the protein data bank, we show that this combined approach can automatically build models where current algorithms fail, including an anisotropically diffracting 3.88 Å RNA polymerase II data set. The method seamlessly automates the process, is ideal for non-specialists and provides a mathematical framework for successfully combining various sources of information in image processing.
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spelling pubmed-38682322013-12-20 Automatic protein structure solution from weak X-ray data Skubák, Pavol Pannu, Navraj S. Nat Commun Article Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets from the protein data bank, we show that this combined approach can automatically build models where current algorithms fail, including an anisotropically diffracting 3.88 Å RNA polymerase II data set. The method seamlessly automates the process, is ideal for non-specialists and provides a mathematical framework for successfully combining various sources of information in image processing. Nature Pub. Group 2013-11-15 /pmc/articles/PMC3868232/ /pubmed/24231803 http://dx.doi.org/10.1038/ncomms3777 Text en Copyright © 2013, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Skubák, Pavol
Pannu, Navraj S.
Automatic protein structure solution from weak X-ray data
title Automatic protein structure solution from weak X-ray data
title_full Automatic protein structure solution from weak X-ray data
title_fullStr Automatic protein structure solution from weak X-ray data
title_full_unstemmed Automatic protein structure solution from weak X-ray data
title_short Automatic protein structure solution from weak X-ray data
title_sort automatic protein structure solution from weak x-ray data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868232/
https://www.ncbi.nlm.nih.gov/pubmed/24231803
http://dx.doi.org/10.1038/ncomms3777
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