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Automatic protein structure solution from weak X-ray data
Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets f...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Pub. Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868232/ https://www.ncbi.nlm.nih.gov/pubmed/24231803 http://dx.doi.org/10.1038/ncomms3777 |
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author | Skubák, Pavol Pannu, Navraj S. |
author_facet | Skubák, Pavol Pannu, Navraj S. |
author_sort | Skubák, Pavol |
collection | PubMed |
description | Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets from the protein data bank, we show that this combined approach can automatically build models where current algorithms fail, including an anisotropically diffracting 3.88 Å RNA polymerase II data set. The method seamlessly automates the process, is ideal for non-specialists and provides a mathematical framework for successfully combining various sources of information in image processing. |
format | Online Article Text |
id | pubmed-3868232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Pub. Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-38682322013-12-20 Automatic protein structure solution from weak X-ray data Skubák, Pavol Pannu, Navraj S. Nat Commun Article Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate algorithm that simultaneously combines the structure determination steps. In tests on over 140 real data sets from the protein data bank, we show that this combined approach can automatically build models where current algorithms fail, including an anisotropically diffracting 3.88 Å RNA polymerase II data set. The method seamlessly automates the process, is ideal for non-specialists and provides a mathematical framework for successfully combining various sources of information in image processing. Nature Pub. Group 2013-11-15 /pmc/articles/PMC3868232/ /pubmed/24231803 http://dx.doi.org/10.1038/ncomms3777 Text en Copyright © 2013, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ |
spellingShingle | Article Skubák, Pavol Pannu, Navraj S. Automatic protein structure solution from weak X-ray data |
title | Automatic protein structure solution from weak X-ray data |
title_full | Automatic protein structure solution from weak X-ray data |
title_fullStr | Automatic protein structure solution from weak X-ray data |
title_full_unstemmed | Automatic protein structure solution from weak X-ray data |
title_short | Automatic protein structure solution from weak X-ray data |
title_sort | automatic protein structure solution from weak x-ray data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868232/ https://www.ncbi.nlm.nih.gov/pubmed/24231803 http://dx.doi.org/10.1038/ncomms3777 |
work_keys_str_mv | AT skubakpavol automaticproteinstructuresolutionfromweakxraydata AT pannunavrajs automaticproteinstructuresolutionfromweakxraydata |