Cargando…

Comparison of SSR and SNP Markers in Estimation of Genetic Diversity and Population Structure of Indian Rice Varieties

Simple sequence repeat (SSR) and Single Nucleotide Polymorphic (SNP), the two most robust markers for identifying rice varieties were compared for assessment of genetic diversity and population structure. Total 375 varieties of rice from various regions of India archived at the Indian National GeneB...

Descripción completa

Detalles Bibliográficos
Autores principales:	Singh, Nivedita, Choudhury, Debjani Roy, Singh, Amit Kumar, Kumar, Sundeep, Srinivasan, Kalyani, Tyagi, R. K., Singh, N. K., Singh, Rakesh
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868579/ https://www.ncbi.nlm.nih.gov/pubmed/24367635 http://dx.doi.org/10.1371/journal.pone.0084136

Ejemplares similares

Genetic diversity trend in Indian rice varieties: an analysis using SSR markers
por: Singh, Nivedita, et al.
Publicado: (2016)

Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set
por: Roy Choudhury, Debjani, et al.
Publicado: (2014)

Identification of a Diverse Core Set Panel of Rice From the East Coast Region of India Using SNP Markers
por: Choudhury, Debjani Roy, et al.
Publicado: (2021)

Molecular Characterization of Tinospora cordifolia (Willd.) Miers Using Novel g-SSR Markers and Their Comparison with EST-SSR and SCoT Markers for Genetic Diversity Study
por: Paliwal, Ritu, et al.
Publicado: (2022)

Leaf Transcriptome Sequencing for Identifying Genic-SSR Markers and SNP Heterozygosity in Crossbred Mango Variety ‘Amrapali’ (Mangifera indica L.)
por: Mahato, Ajay Kumar, et al.
Publicado: (2016)

Molecular characterization and genetic diversity analysis in Indian mustard (Brassica juncea L. Czern & Coss.) varieties using SSR markers
por: Singh, K. H., et al.
Publicado: (2022)

Development of Novel Genomic Simple Sequence Repeat (g-SSR) Markers and Their Validation for Genetic Diversity Analyses in Kalmegh [Andrographis paniculata (Burm. F.) Nees]
por: Kumar, Ramesh, et al.
Publicado: (2020)

Genetic diversity and population structure analysis of Kala bhat (Glycine max (L.) Merrill) genotypes using SSR markers
por: Hipparagi, Yegappa, et al.
Publicado: (2017)

Identification, analysis and development of salt responsive candidate gene based SSR markers in wheat
por: Singh, Amit Kumar, et al.
Publicado: (2018)

Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm
por: Mishra, Shefali, et al.
Publicado: (2016)

Abiotic Stress Responsive miRNA-Target Network and Related Markers (SNP, SSR) in Brassica juncea
por: Singh, Indra, et al.
Publicado: (2017)

Molecular Screening of Blast Resistance Genes in Rice using SSR Markers
por: Singh, A. K., et al.
Publicado: (2015)

Genetic Diversity and Population Structure of Myanmar Rice (Oryza sativa L.) Varieties Using DArTseq-Based SNP and SilicoDArT Markers
por: Thant, Aye Aye, et al.
Publicado: (2021)

Genetic diversity analysis and variety identification using SSR and SNP markers in melon
por: Zhang, Jian, et al.
Publicado: (2023)

Marker-Assisted Introgression of Saltol QTL Enhances Seedling Stage Salt Tolerance in the Rice Variety “Pusa Basmati 1”
por: Singh, Vivek Kumar, et al.
Publicado: (2018)

Agro-morphological traits and SSR markers reveal genetic variations in germplasm accessions of Indian mustard – An industrially important oilseed crop
por: Singh, Lal, et al.
Publicado: (2022)

Marker-assisted forward and backcross breeding for improvement of elite Indian rice variety Naveen for multiple biotic and abiotic stress tolerance
por: Janaki Ramayya, Perumalla, et al.
Publicado: (2021)

Development of novel g-SSR markers in guava (Psidium guajava L.) cv. Allahabad Safeda and their application in genetic diversity, population structure and cross species transferability studies
por: Kumar, Chavlesh, et al.
Publicado: (2020)

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice
por: Singh, Nisha, et al.
Publicado: (2015)

Rice of Northeast India harbor rich genetic diversity as measured by SSR markers and Zn/Fe content
por: Vanlalsanga, et al.
Publicado: (2019)

Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits
por: Vikram, Prashant, et al.
Publicado: (2015)

Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice
por: Singh, Vijay Kumar, et al.
Publicado: (2018)

Pusa Basmati 1121 – a rice variety with exceptional kernel elongation and volume expansion after cooking
por: Singh, Vijaipal, et al.
Publicado: (2018)

Molecular characterization and genetic diversity studies of Indian soybean (Glycine max (L.) Merr.) cultivars using SSR markers
por: Kumar, S. P. Jeevan, et al.
Publicado: (2021)

Genetics of Fusarium Wilt Resistance in Pigeonpea (Cajanus cajan) and Efficacy of Associated SSR Markers
por: Singh, Deepu, et al.
Publicado: (2016)

Development of model web-server for crop variety identification using throughput SNP genotyping data
por: Singh, Rajender, et al.
Publicado: (2019)

An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating Grain Weight in Rice
por: Daware, Anurag, et al.
Publicado: (2016)

Molecular Assortment of Lens Species with Different Adaptations to Drought Conditions Using SSR Markers
por: Singh, Dharmendra, et al.
Publicado: (2016)

TinoTranscriptDB: A Database of Transcripts and Microsatellite Markers of Tinospora cordifolia, an Important Medicinal Plant
por: Singh, Rakesh, et al.
Publicado: (2022)

Comparative response of rice cultivars to elevated air temperature in Bhabar region of Indian Himalaya: status on yield attributes
por: Kumar, Narendra, et al.
Publicado: (2021)

Genetic diversity and genetic relationships of japonica rice varieties in Northeast Asia based on SSR markers
por: Wang, Jingguo, et al.
Publicado: (2014)

Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice
por: Singh, Nisha, et al.
Publicado: (2017)

Profiling of 2-Acetyl-1-Pyrroline and Other Volatile Compounds in Raw and Cooked Rice of Traditional and Improved Varieties of India
por: Kasote, Deepak, et al.
Publicado: (2021)

Productivity of sodic soils can be enhanced through the use of salt tolerant rice varieties and proper agronomic practices
por: Singh, Y.P., et al.
Publicado: (2016)

More and more of less and less: Is genomics‐based breeding of dry direct‐seeded rice (DDSR) varieties the need of hour?
por: Sagare, Deepti B., et al.
Publicado: (2020)

A SNP (g.358A > T) at intronic region of CD9 molecule of crossbred bulls may associate with spermatozoal motility
por: Kumar, Sushil, et al.
Publicado: (2015)

Soil microbial and nutrient dynamics under different sowings environment of Indian mustard (Brassica juncea L.) in rice based cropping system
por: Kumar, Sunil, et al.
Publicado: (2021)

Identification and characterization of SSR, SNP and InDel molecular markers from RNA-Seq data of guar (Cyamopsis tetragonoloba, L. Taub.) roots
por: Thakur, Omika, et al.
Publicado: (2018)

Cytoplasmic genome of Indian potato varieties and breeding lines vis a vis prospects in potato breeding
por: Sood, Salej, et al.
Publicado: (2021)

Mapping QTLs for Salt Tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip
por: Tiwari, Sushma, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_sm2k22mjshvk1mvefe3rqkd2i0