RefPrimeCouch—a reference gene primer CouchApp

To support a quantitative real-time polymerase chain reaction standardization project, a new reference gene database application was required. The new database application was built with the explicit goal of simplifying not only the development process but also making the user interface more respons...

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Detalles Bibliográficos
Autores principales: Silbermann, Jascha, Wernicke, Catrin, Pospisil, Heike, Frohme, Marcus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871799/
https://www.ncbi.nlm.nih.gov/pubmed/24368831
http://dx.doi.org/10.1093/database/bat081
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author Silbermann, Jascha
Wernicke, Catrin
Pospisil, Heike
Frohme, Marcus
author_facet Silbermann, Jascha
Wernicke, Catrin
Pospisil, Heike
Frohme, Marcus
author_sort Silbermann, Jascha
collection PubMed
description To support a quantitative real-time polymerase chain reaction standardization project, a new reference gene database application was required. The new database application was built with the explicit goal of simplifying not only the development process but also making the user interface more responsive and intuitive. To this end, CouchDB was used as the backend with a lightweight dynamic user interface implemented client-side as a one-page web application. Data entry and curation processes were streamlined using an OpenRefine-based workflow. The new RefPrimeCouch database application provides its data online under an Open Database License. Database URL: http://hpclife.th-wildau.de:5984/rpc/_design/rpc/view.html
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spelling pubmed-38717992013-12-26 RefPrimeCouch—a reference gene primer CouchApp Silbermann, Jascha Wernicke, Catrin Pospisil, Heike Frohme, Marcus Database (Oxford) Original Article To support a quantitative real-time polymerase chain reaction standardization project, a new reference gene database application was required. The new database application was built with the explicit goal of simplifying not only the development process but also making the user interface more responsive and intuitive. To this end, CouchDB was used as the backend with a lightweight dynamic user interface implemented client-side as a one-page web application. Data entry and curation processes were streamlined using an OpenRefine-based workflow. The new RefPrimeCouch database application provides its data online under an Open Database License. Database URL: http://hpclife.th-wildau.de:5984/rpc/_design/rpc/view.html Oxford University Press 2013-12-24 /pmc/articles/PMC3871799/ /pubmed/24368831 http://dx.doi.org/10.1093/database/bat081 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Silbermann, Jascha
Wernicke, Catrin
Pospisil, Heike
Frohme, Marcus
RefPrimeCouch—a reference gene primer CouchApp
title RefPrimeCouch—a reference gene primer CouchApp
title_full RefPrimeCouch—a reference gene primer CouchApp
title_fullStr RefPrimeCouch—a reference gene primer CouchApp
title_full_unstemmed RefPrimeCouch—a reference gene primer CouchApp
title_short RefPrimeCouch—a reference gene primer CouchApp
title_sort refprimecouch—a reference gene primer couchapp
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871799/
https://www.ncbi.nlm.nih.gov/pubmed/24368831
http://dx.doi.org/10.1093/database/bat081
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AT pospisilheike refprimecouchareferencegeneprimercouchapp
AT frohmemarcus refprimecouchareferencegeneprimercouchapp

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