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Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow

Several quantum-mechanics-based descriptors were derived for a diverse set of 48 organic compounds using AM1, PM3, HF/6-31+G, and DFT-B3LYP/6-31+G (d) level of the theory. LC(50) values of acute toxicity of the compounds were correlated to the fathead minnow and predicted using calculated descriptor...

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Autores principales: Eroglu, Erol, Palaz, Selami, Oltulu, Oral, Turkmen, Hasan, Ozaydın, Cihat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871804/
http://dx.doi.org/10.3390/ijms8121265
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author Eroglu, Erol
Palaz, Selami
Oltulu, Oral
Turkmen, Hasan
Ozaydın, Cihat
author_facet Eroglu, Erol
Palaz, Selami
Oltulu, Oral
Turkmen, Hasan
Ozaydın, Cihat
author_sort Eroglu, Erol
collection PubMed
description Several quantum-mechanics-based descriptors were derived for a diverse set of 48 organic compounds using AM1, PM3, HF/6-31+G, and DFT-B3LYP/6-31+G (d) level of the theory. LC(50) values of acute toxicity of the compounds were correlated to the fathead minnow and predicted using calculated descriptors by employing Comprehensive Descriptors for Structural and Statistical Analysis (CODESSA) program. The heuristic method, implemented in the CODESSA program for selecting the ‘best’ regression model, was applied to a pre-selection of the most-representative descriptors by sequentially eliminating descriptors that did not satisfy a certain level of statistical criterion. First model, statistically, the most significant one has been drawn up with the help of DFT calculations in which the squared correlation coefficient R(2) is 0.85, and the squared cross-validation correlation coefficient [Formula: see text] is 0.79. Second model, which has been drawn up with the help of HF calculations, has its statistical quality very close to the DFT-based one and in this model value of R(2) is 0.84 and that of [Formula: see text] is 0.78. Third and fourth models have been drawn up with the help of AM1 and PM3 calculations, respectively. The values of R(2) and [Formula: see text] in the third case are correspondingly 0.79 and 0.66, whereas in the fourth case they are 0.78 and 0.65 respectively. Results of this study clearly demonstrate that for the calculations of descriptors in modeling of acute toxicity of organic compounds to the fathead minnow, first principal methods are much more useful than semi-empirical methods.
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spelling pubmed-38718042013-12-26 Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow Eroglu, Erol Palaz, Selami Oltulu, Oral Turkmen, Hasan Ozaydın, Cihat Int J Mol Sci Article Several quantum-mechanics-based descriptors were derived for a diverse set of 48 organic compounds using AM1, PM3, HF/6-31+G, and DFT-B3LYP/6-31+G (d) level of the theory. LC(50) values of acute toxicity of the compounds were correlated to the fathead minnow and predicted using calculated descriptors by employing Comprehensive Descriptors for Structural and Statistical Analysis (CODESSA) program. The heuristic method, implemented in the CODESSA program for selecting the ‘best’ regression model, was applied to a pre-selection of the most-representative descriptors by sequentially eliminating descriptors that did not satisfy a certain level of statistical criterion. First model, statistically, the most significant one has been drawn up with the help of DFT calculations in which the squared correlation coefficient R(2) is 0.85, and the squared cross-validation correlation coefficient [Formula: see text] is 0.79. Second model, which has been drawn up with the help of HF calculations, has its statistical quality very close to the DFT-based one and in this model value of R(2) is 0.84 and that of [Formula: see text] is 0.78. Third and fourth models have been drawn up with the help of AM1 and PM3 calculations, respectively. The values of R(2) and [Formula: see text] in the third case are correspondingly 0.79 and 0.66, whereas in the fourth case they are 0.78 and 0.65 respectively. Results of this study clearly demonstrate that for the calculations of descriptors in modeling of acute toxicity of organic compounds to the fathead minnow, first principal methods are much more useful than semi-empirical methods. Molecular Diversity Preservation International (MDPI) 2008-01-03 /pmc/articles/PMC3871804/ http://dx.doi.org/10.3390/ijms8121265 Text en © 2007 by MDPI Reproduction is permitted for noncommercial purposes.
spellingShingle Article
Eroglu, Erol
Palaz, Selami
Oltulu, Oral
Turkmen, Hasan
Ozaydın, Cihat
Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title_full Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title_fullStr Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title_full_unstemmed Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title_short Comparative QSTR Study Using Semi-Empirical and First Principle Methods Based Descriptors for Acute Toxicity of Diverse Organic Compounds to the Fathead Minnow
title_sort comparative qstr study using semi-empirical and first principle methods based descriptors for acute toxicity of diverse organic compounds to the fathead minnow
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871804/
http://dx.doi.org/10.3390/ijms8121265
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