Cargando…

Neural system prediction and identification challenge

Can we infer the function of a biological neural network (BNN) if we know the connectivity and activity of all its constituent neurons?This question is at the core of neuroscience and, accordingly, various methods have been developed to record the activity and connectivity of as many neurons as poss...

Descripción completa

Detalles Bibliográficos
Autores principales: Vlachos, Ioannis, Zaytsev, Yury V., Spreizer, Sebastian, Aertsen, Ad, Kumar, Arvind
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3872335/
https://www.ncbi.nlm.nih.gov/pubmed/24399966
http://dx.doi.org/10.3389/fninf.2013.00043
_version_ 1782296949281521664
author Vlachos, Ioannis
Zaytsev, Yury V.
Spreizer, Sebastian
Aertsen, Ad
Kumar, Arvind
author_facet Vlachos, Ioannis
Zaytsev, Yury V.
Spreizer, Sebastian
Aertsen, Ad
Kumar, Arvind
author_sort Vlachos, Ioannis
collection PubMed
description Can we infer the function of a biological neural network (BNN) if we know the connectivity and activity of all its constituent neurons?This question is at the core of neuroscience and, accordingly, various methods have been developed to record the activity and connectivity of as many neurons as possible. Surprisingly, there is no theoretical or computational demonstration that neuronal activity and connectivity are indeed sufficient to infer the function of a BNN. Therefore, we pose the Neural Systems Identification and Prediction Challenge (nuSPIC). We provide the connectivity and activity of all neurons and invite participants (1) to infer the functions implemented (hard-wired) in spiking neural networks (SNNs) by stimulating and recording the activity of neurons and, (2) to implement predefined mathematical/biological functions using SNNs. The nuSPICs can be accessed via a web-interface to the NEST simulator and the user is not required to know any specific programming language. Furthermore, the nuSPICs can be used as a teaching tool. Finally, nuSPICs use the crowd-sourcing model to address scientific issues. With this computational approach we aim to identify which functions can be inferred by systematic recordings of neuronal activity and connectivity. In addition, nuSPICs will help the design and application of new experimental paradigms based on the structure of the SNN and the presumed function which is to be discovered.
format Online
Article
Text
id pubmed-3872335
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-38723352014-01-07 Neural system prediction and identification challenge Vlachos, Ioannis Zaytsev, Yury V. Spreizer, Sebastian Aertsen, Ad Kumar, Arvind Front Neuroinform Neuroscience Can we infer the function of a biological neural network (BNN) if we know the connectivity and activity of all its constituent neurons?This question is at the core of neuroscience and, accordingly, various methods have been developed to record the activity and connectivity of as many neurons as possible. Surprisingly, there is no theoretical or computational demonstration that neuronal activity and connectivity are indeed sufficient to infer the function of a BNN. Therefore, we pose the Neural Systems Identification and Prediction Challenge (nuSPIC). We provide the connectivity and activity of all neurons and invite participants (1) to infer the functions implemented (hard-wired) in spiking neural networks (SNNs) by stimulating and recording the activity of neurons and, (2) to implement predefined mathematical/biological functions using SNNs. The nuSPICs can be accessed via a web-interface to the NEST simulator and the user is not required to know any specific programming language. Furthermore, the nuSPICs can be used as a teaching tool. Finally, nuSPICs use the crowd-sourcing model to address scientific issues. With this computational approach we aim to identify which functions can be inferred by systematic recordings of neuronal activity and connectivity. In addition, nuSPICs will help the design and application of new experimental paradigms based on the structure of the SNN and the presumed function which is to be discovered. Frontiers Media S.A. 2013-12-25 /pmc/articles/PMC3872335/ /pubmed/24399966 http://dx.doi.org/10.3389/fninf.2013.00043 Text en Copyright © 2013 Vlachos, Zaytsev, Spreizer, Aertsen and Kumar. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Vlachos, Ioannis
Zaytsev, Yury V.
Spreizer, Sebastian
Aertsen, Ad
Kumar, Arvind
Neural system prediction and identification challenge
title Neural system prediction and identification challenge
title_full Neural system prediction and identification challenge
title_fullStr Neural system prediction and identification challenge
title_full_unstemmed Neural system prediction and identification challenge
title_short Neural system prediction and identification challenge
title_sort neural system prediction and identification challenge
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3872335/
https://www.ncbi.nlm.nih.gov/pubmed/24399966
http://dx.doi.org/10.3389/fninf.2013.00043
work_keys_str_mv AT vlachosioannis neuralsystempredictionandidentificationchallenge
AT zaytsevyuryv neuralsystempredictionandidentificationchallenge
AT spreizersebastian neuralsystempredictionandidentificationchallenge
AT aertsenad neuralsystempredictionandidentificationchallenge
AT kumararvind neuralsystempredictionandidentificationchallenge