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Optimal Control of Transitions between Nonequilibrium Steady States
Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873282/ https://www.ncbi.nlm.nih.gov/pubmed/24386112 http://dx.doi.org/10.1371/journal.pone.0082754 |
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author | Zulkowski, Patrick R. Sivak, David A. DeWeese, Michael R. |
author_facet | Zulkowski, Patrick R. Sivak, David A. DeWeese, Michael R. |
author_sort | Zulkowski, Patrick R. |
collection | PubMed |
description | Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines. |
format | Online Article Text |
id | pubmed-3873282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-38732822014-01-02 Optimal Control of Transitions between Nonequilibrium Steady States Zulkowski, Patrick R. Sivak, David A. DeWeese, Michael R. PLoS One Research Article Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines. Public Library of Science 2013-12-26 /pmc/articles/PMC3873282/ /pubmed/24386112 http://dx.doi.org/10.1371/journal.pone.0082754 Text en © 2013 Zulkowski et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Zulkowski, Patrick R. Sivak, David A. DeWeese, Michael R. Optimal Control of Transitions between Nonequilibrium Steady States |
title | Optimal Control of Transitions between Nonequilibrium Steady States |
title_full | Optimal Control of Transitions between Nonequilibrium Steady States |
title_fullStr | Optimal Control of Transitions between Nonequilibrium Steady States |
title_full_unstemmed | Optimal Control of Transitions between Nonequilibrium Steady States |
title_short | Optimal Control of Transitions between Nonequilibrium Steady States |
title_sort | optimal control of transitions between nonequilibrium steady states |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873282/ https://www.ncbi.nlm.nih.gov/pubmed/24386112 http://dx.doi.org/10.1371/journal.pone.0082754 |
work_keys_str_mv | AT zulkowskipatrickr optimalcontroloftransitionsbetweennonequilibriumsteadystates AT sivakdavida optimalcontroloftransitionsbetweennonequilibriumsteadystates AT deweesemichaelr optimalcontroloftransitionsbetweennonequilibriumsteadystates |