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Optimal Control of Transitions between Nonequilibrium Steady States

Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano...

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Detalles Bibliográficos
Autores principales: Zulkowski, Patrick R., Sivak, David A., DeWeese, Michael R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873282/
https://www.ncbi.nlm.nih.gov/pubmed/24386112
http://dx.doi.org/10.1371/journal.pone.0082754
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author Zulkowski, Patrick R.
Sivak, David A.
DeWeese, Michael R.
author_facet Zulkowski, Patrick R.
Sivak, David A.
DeWeese, Michael R.
author_sort Zulkowski, Patrick R.
collection PubMed
description Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines.
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spelling pubmed-38732822014-01-02 Optimal Control of Transitions between Nonequilibrium Steady States Zulkowski, Patrick R. Sivak, David A. DeWeese, Michael R. PLoS One Research Article Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines. Public Library of Science 2013-12-26 /pmc/articles/PMC3873282/ /pubmed/24386112 http://dx.doi.org/10.1371/journal.pone.0082754 Text en © 2013 Zulkowski et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Zulkowski, Patrick R.
Sivak, David A.
DeWeese, Michael R.
Optimal Control of Transitions between Nonequilibrium Steady States
title Optimal Control of Transitions between Nonequilibrium Steady States
title_full Optimal Control of Transitions between Nonequilibrium Steady States
title_fullStr Optimal Control of Transitions between Nonequilibrium Steady States
title_full_unstemmed Optimal Control of Transitions between Nonequilibrium Steady States
title_short Optimal Control of Transitions between Nonequilibrium Steady States
title_sort optimal control of transitions between nonequilibrium steady states
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873282/
https://www.ncbi.nlm.nih.gov/pubmed/24386112
http://dx.doi.org/10.1371/journal.pone.0082754
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