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Real-Time Influenza Forecasts during the 2012–2013 Season

Recently, we developed a seasonal influenza prediction system that uses an advanced data assimilation technique and real-time estimates of influenza incidence to optimize and initialize a population-based mathematical model of influenza transmission dynamics. This system was used to generate and eva...

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Detalles Bibliográficos
Autores principales: Shaman, Jeffrey, Karspeck, Alicia, Yang, Wan, Tamerius, James, Lipsitch, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873365/
https://www.ncbi.nlm.nih.gov/pubmed/24302074
http://dx.doi.org/10.1038/ncomms3837
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author Shaman, Jeffrey
Karspeck, Alicia
Yang, Wan
Tamerius, James
Lipsitch, Marc
author_facet Shaman, Jeffrey
Karspeck, Alicia
Yang, Wan
Tamerius, James
Lipsitch, Marc
author_sort Shaman, Jeffrey
collection PubMed
description Recently, we developed a seasonal influenza prediction system that uses an advanced data assimilation technique and real-time estimates of influenza incidence to optimize and initialize a population-based mathematical model of influenza transmission dynamics. This system was used to generate and evaluate retrospective forecasts of influenza peak timing in New York City. Here we present weekly forecasts of seasonal influenza developed and run in real time for 108 cites in the United States during the recent 2012–2013 season. Reliable ensemble forecasts of influenza outbreak peak timing with leads of up to 9 weeks were produced. Forecast accuracy increased as the season progressed, and the forecasts significantly outperformed alternate, analog prediction methods. By Week 52, prior to peak for the majority of cities, 63% of all ensemble forecasts were accurate. To our knowledge, this is the first time predictions of seasonal influenza have been made in real time and with demonstrated accuracy.
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spelling pubmed-38733652014-06-03 Real-Time Influenza Forecasts during the 2012–2013 Season Shaman, Jeffrey Karspeck, Alicia Yang, Wan Tamerius, James Lipsitch, Marc Nat Commun Article Recently, we developed a seasonal influenza prediction system that uses an advanced data assimilation technique and real-time estimates of influenza incidence to optimize and initialize a population-based mathematical model of influenza transmission dynamics. This system was used to generate and evaluate retrospective forecasts of influenza peak timing in New York City. Here we present weekly forecasts of seasonal influenza developed and run in real time for 108 cites in the United States during the recent 2012–2013 season. Reliable ensemble forecasts of influenza outbreak peak timing with leads of up to 9 weeks were produced. Forecast accuracy increased as the season progressed, and the forecasts significantly outperformed alternate, analog prediction methods. By Week 52, prior to peak for the majority of cities, 63% of all ensemble forecasts were accurate. To our knowledge, this is the first time predictions of seasonal influenza have been made in real time and with demonstrated accuracy. 2013 /pmc/articles/PMC3873365/ /pubmed/24302074 http://dx.doi.org/10.1038/ncomms3837 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Shaman, Jeffrey
Karspeck, Alicia
Yang, Wan
Tamerius, James
Lipsitch, Marc
Real-Time Influenza Forecasts during the 2012–2013 Season
title Real-Time Influenza Forecasts during the 2012–2013 Season
title_full Real-Time Influenza Forecasts during the 2012–2013 Season
title_fullStr Real-Time Influenza Forecasts during the 2012–2013 Season
title_full_unstemmed Real-Time Influenza Forecasts during the 2012–2013 Season
title_short Real-Time Influenza Forecasts during the 2012–2013 Season
title_sort real-time influenza forecasts during the 2012–2013 season
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873365/
https://www.ncbi.nlm.nih.gov/pubmed/24302074
http://dx.doi.org/10.1038/ncomms3837
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