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SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes

Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This proc...

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Autores principales: Spill, Yannick G., Kim, Seung Joong, Schneidman-Duhovny, Dina, Russel, Daniel, Webb, Ben, Sali, Andrej, Nilges, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874021/
https://www.ncbi.nlm.nih.gov/pubmed/24365937
http://dx.doi.org/10.1107/S1600577513030117
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author Spill, Yannick G.
Kim, Seung Joong
Schneidman-Duhovny, Dina
Russel, Daniel
Webb, Ben
Sali, Andrej
Nilges, Michael
author_facet Spill, Yannick G.
Kim, Seung Joong
Schneidman-Duhovny, Dina
Russel, Daniel
Webb, Ben
Sali, Andrej
Nilges, Michael
author_sort Spill, Yannick G.
collection PubMed
description Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This procedure is very subjective and results vary from user to user. Up to now, no robust automatic procedure has been published to perform this step, preventing the application of SAXS to high-throughput projects. Here, SAXS Merge, a fully automated statistical method for merging SAXS profiles using Gaussian processes, is presented. This method requires only the buffer-subtracted SAXS profiles in a specific order. At the heart of its formulation is non-linear interpolation using Gaussian processes, which provides a statement of the problem that accounts for correlation in the data.
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spelling pubmed-38740212013-12-30 SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes Spill, Yannick G. Kim, Seung Joong Schneidman-Duhovny, Dina Russel, Daniel Webb, Ben Sali, Andrej Nilges, Michael J Synchrotron Radiat Research Papers Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This procedure is very subjective and results vary from user to user. Up to now, no robust automatic procedure has been published to perform this step, preventing the application of SAXS to high-throughput projects. Here, SAXS Merge, a fully automated statistical method for merging SAXS profiles using Gaussian processes, is presented. This method requires only the buffer-subtracted SAXS profiles in a specific order. At the heart of its formulation is non-linear interpolation using Gaussian processes, which provides a statement of the problem that accounts for correlation in the data. International Union of Crystallography 2014-01-01 2013-12-14 /pmc/articles/PMC3874021/ /pubmed/24365937 http://dx.doi.org/10.1107/S1600577513030117 Text en © Yannick G. Spill et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Spill, Yannick G.
Kim, Seung Joong
Schneidman-Duhovny, Dina
Russel, Daniel
Webb, Ben
Sali, Andrej
Nilges, Michael
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title_full SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title_fullStr SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title_full_unstemmed SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title_short SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
title_sort saxs merge: an automated statistical method to merge saxs profiles using gaussian processes
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874021/
https://www.ncbi.nlm.nih.gov/pubmed/24365937
http://dx.doi.org/10.1107/S1600577513030117
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