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SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes
Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This proc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874021/ https://www.ncbi.nlm.nih.gov/pubmed/24365937 http://dx.doi.org/10.1107/S1600577513030117 |
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author | Spill, Yannick G. Kim, Seung Joong Schneidman-Duhovny, Dina Russel, Daniel Webb, Ben Sali, Andrej Nilges, Michael |
author_facet | Spill, Yannick G. Kim, Seung Joong Schneidman-Duhovny, Dina Russel, Daniel Webb, Ben Sali, Andrej Nilges, Michael |
author_sort | Spill, Yannick G. |
collection | PubMed |
description | Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This procedure is very subjective and results vary from user to user. Up to now, no robust automatic procedure has been published to perform this step, preventing the application of SAXS to high-throughput projects. Here, SAXS Merge, a fully automated statistical method for merging SAXS profiles using Gaussian processes, is presented. This method requires only the buffer-subtracted SAXS profiles in a specific order. At the heart of its formulation is non-linear interpolation using Gaussian processes, which provides a statement of the problem that accounts for correlation in the data. |
format | Online Article Text |
id | pubmed-3874021 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-38740212013-12-30 SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes Spill, Yannick G. Kim, Seung Joong Schneidman-Duhovny, Dina Russel, Daniel Webb, Ben Sali, Andrej Nilges, Michael J Synchrotron Radiat Research Papers Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been obtained by manual merging of scattering profiles from different concentrations and exposure times. This procedure is very subjective and results vary from user to user. Up to now, no robust automatic procedure has been published to perform this step, preventing the application of SAXS to high-throughput projects. Here, SAXS Merge, a fully automated statistical method for merging SAXS profiles using Gaussian processes, is presented. This method requires only the buffer-subtracted SAXS profiles in a specific order. At the heart of its formulation is non-linear interpolation using Gaussian processes, which provides a statement of the problem that accounts for correlation in the data. International Union of Crystallography 2014-01-01 2013-12-14 /pmc/articles/PMC3874021/ /pubmed/24365937 http://dx.doi.org/10.1107/S1600577513030117 Text en © Yannick G. Spill et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Spill, Yannick G. Kim, Seung Joong Schneidman-Duhovny, Dina Russel, Daniel Webb, Ben Sali, Andrej Nilges, Michael SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title |
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title_full |
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title_fullStr |
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title_full_unstemmed |
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title_short |
SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes |
title_sort | saxs merge: an automated statistical method to merge saxs profiles using gaussian processes |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874021/ https://www.ncbi.nlm.nih.gov/pubmed/24365937 http://dx.doi.org/10.1107/S1600577513030117 |
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