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Multiple comparisons permutation test for image based data mining in radiotherapy
Comparing incidental dose distributions (i.e. images) of patients with different outcomes is a straightforward way to explore dose-response hypotheses in radiotherapy. In this paper, we introduced a permutation test that compares images, such as dose distributions from radiotherapy, while tackling t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3880053/ https://www.ncbi.nlm.nih.gov/pubmed/24365155 http://dx.doi.org/10.1186/1748-717X-8-293 |
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author | Chen, Chun Witte, Marnix Heemsbergen, Wilma Herk, Marcel van |
author_facet | Chen, Chun Witte, Marnix Heemsbergen, Wilma Herk, Marcel van |
author_sort | Chen, Chun |
collection | PubMed |
description | Comparing incidental dose distributions (i.e. images) of patients with different outcomes is a straightforward way to explore dose-response hypotheses in radiotherapy. In this paper, we introduced a permutation test that compares images, such as dose distributions from radiotherapy, while tackling the multiple comparisons problem. A test statistic T(max) was proposed that summarizes the differences between the images into a single value and a permutation procedure was employed to compute the adjusted p-value. We demonstrated the method in two retrospective studies: a prostate study that relates 3D dose distributions to failure, and an esophagus study that relates 2D surface dose distributions of the esophagus to acute esophagus toxicity. As a result, we were able to identify suspicious regions that are significantly associated with failure (prostate study) or toxicity (esophagus study). Permutation testing allows direct comparison of images from different patient categories and is a useful tool for data mining in radiotherapy. |
format | Online Article Text |
id | pubmed-3880053 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-38800532014-01-09 Multiple comparisons permutation test for image based data mining in radiotherapy Chen, Chun Witte, Marnix Heemsbergen, Wilma Herk, Marcel van Radiat Oncol Methodology Comparing incidental dose distributions (i.e. images) of patients with different outcomes is a straightforward way to explore dose-response hypotheses in radiotherapy. In this paper, we introduced a permutation test that compares images, such as dose distributions from radiotherapy, while tackling the multiple comparisons problem. A test statistic T(max) was proposed that summarizes the differences between the images into a single value and a permutation procedure was employed to compute the adjusted p-value. We demonstrated the method in two retrospective studies: a prostate study that relates 3D dose distributions to failure, and an esophagus study that relates 2D surface dose distributions of the esophagus to acute esophagus toxicity. As a result, we were able to identify suspicious regions that are significantly associated with failure (prostate study) or toxicity (esophagus study). Permutation testing allows direct comparison of images from different patient categories and is a useful tool for data mining in radiotherapy. BioMed Central 2013-12-23 /pmc/articles/PMC3880053/ /pubmed/24365155 http://dx.doi.org/10.1186/1748-717X-8-293 Text en Copyright © 2013 Chen et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methodology Chen, Chun Witte, Marnix Heemsbergen, Wilma Herk, Marcel van Multiple comparisons permutation test for image based data mining in radiotherapy |
title | Multiple comparisons permutation test for image based data mining in radiotherapy |
title_full | Multiple comparisons permutation test for image based data mining in radiotherapy |
title_fullStr | Multiple comparisons permutation test for image based data mining in radiotherapy |
title_full_unstemmed | Multiple comparisons permutation test for image based data mining in radiotherapy |
title_short | Multiple comparisons permutation test for image based data mining in radiotherapy |
title_sort | multiple comparisons permutation test for image based data mining in radiotherapy |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3880053/ https://www.ncbi.nlm.nih.gov/pubmed/24365155 http://dx.doi.org/10.1186/1748-717X-8-293 |
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