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The Protein Model Portal—a comprehensive resource for protein structure and model information

The Protein Model Portal (PMP) has been developed to foster effective use of 3D molecular models in biomedical research by providing convenient and comprehensive access to structural information for proteins. Both experimental structures and theoretical models for a given protein can be searched sim...

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Detalles Bibliográficos
Autores principales: Haas, Juergen, Roth, Steven, Arnold, Konstantin, Kiefer, Florian, Schmidt, Tobias, Bordoli, Lorenza, Schwede, Torsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889916/
https://www.ncbi.nlm.nih.gov/pubmed/23624946
http://dx.doi.org/10.1093/database/bat031
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author Haas, Juergen
Roth, Steven
Arnold, Konstantin
Kiefer, Florian
Schmidt, Tobias
Bordoli, Lorenza
Schwede, Torsten
author_facet Haas, Juergen
Roth, Steven
Arnold, Konstantin
Kiefer, Florian
Schmidt, Tobias
Bordoli, Lorenza
Schwede, Torsten
author_sort Haas, Juergen
collection PubMed
description The Protein Model Portal (PMP) has been developed to foster effective use of 3D molecular models in biomedical research by providing convenient and comprehensive access to structural information for proteins. Both experimental structures and theoretical models for a given protein can be searched simultaneously and analyzed for structural variability. By providing a comprehensive view on structural information, PMP offers the opportunity to apply consistent assessment and validation criteria to the complete set of structural models available for proteins. PMP is an open project so that new methods developed by the community can contribute to PMP, for example, new modeling servers for creating homology models and model quality estimation servers for model validation. The accuracy of participating modeling servers is continuously evaluated by the Continuous Automated Model EvaluatiOn (CAMEO) project. The PMP offers a unique interface to visualize structural coverage of a protein combining both theoretical models and experimental structures, allowing straightforward assessment of the model quality and hence their utility. The portal is updated regularly and actively developed to include latest methods in the field of computational structural biology. Database URL: http://www.proteinmodelportal.org
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spelling pubmed-38899162014-01-13 The Protein Model Portal—a comprehensive resource for protein structure and model information Haas, Juergen Roth, Steven Arnold, Konstantin Kiefer, Florian Schmidt, Tobias Bordoli, Lorenza Schwede, Torsten Database (Oxford) Original Article The Protein Model Portal (PMP) has been developed to foster effective use of 3D molecular models in biomedical research by providing convenient and comprehensive access to structural information for proteins. Both experimental structures and theoretical models for a given protein can be searched simultaneously and analyzed for structural variability. By providing a comprehensive view on structural information, PMP offers the opportunity to apply consistent assessment and validation criteria to the complete set of structural models available for proteins. PMP is an open project so that new methods developed by the community can contribute to PMP, for example, new modeling servers for creating homology models and model quality estimation servers for model validation. The accuracy of participating modeling servers is continuously evaluated by the Continuous Automated Model EvaluatiOn (CAMEO) project. The PMP offers a unique interface to visualize structural coverage of a protein combining both theoretical models and experimental structures, allowing straightforward assessment of the model quality and hence their utility. The portal is updated regularly and actively developed to include latest methods in the field of computational structural biology. Database URL: http://www.proteinmodelportal.org Oxford University Press 2013-04-19 /pmc/articles/PMC3889916/ /pubmed/23624946 http://dx.doi.org/10.1093/database/bat031 Text en Published by Oxford University Press on behalf of US Government 2013.
spellingShingle Original Article
Haas, Juergen
Roth, Steven
Arnold, Konstantin
Kiefer, Florian
Schmidt, Tobias
Bordoli, Lorenza
Schwede, Torsten
The Protein Model Portal—a comprehensive resource for protein structure and model information
title The Protein Model Portal—a comprehensive resource for protein structure and model information
title_full The Protein Model Portal—a comprehensive resource for protein structure and model information
title_fullStr The Protein Model Portal—a comprehensive resource for protein structure and model information
title_full_unstemmed The Protein Model Portal—a comprehensive resource for protein structure and model information
title_short The Protein Model Portal—a comprehensive resource for protein structure and model information
title_sort protein model portal—a comprehensive resource for protein structure and model information
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889916/
https://www.ncbi.nlm.nih.gov/pubmed/23624946
http://dx.doi.org/10.1093/database/bat031
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